Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48504 * 109.47000 * 269.99278 * 3 2 1 5 5 H 1.48493 * 109.47299 * 29.99594 * 3 2 1 6 6 H 1.48500 * 109.47405 * 149.99810 * 3 2 1 7 7 C 1.37874 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00023 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00678 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47519 * 179.97438 * 9 7 2 11 11 H 1.09002 * 115.54951 * 330.58409 * 10 9 7 12 12 C 1.53002 * 117.49888 * 116.25436 * 10 9 7 13 13 C 1.53000 * 117.50107 * 184.91198 * 10 9 7 14 14 H 1.09008 * 117.49673 * 359.97438 * 13 10 9 15 15 C 1.52995 * 117.49920 * 144.97535 * 13 10 9 16 16 C 1.52999 * 109.47413 * 300.00082 * 15 13 10 17 17 C 1.52995 * 109.47413 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47238 * 60.00004 * 17 16 15 19 19 C 1.52993 * 109.47184 * 300.00353 * 18 17 16 20 20 C 1.52999 * 109.47531 * 59.99425 * 19 18 17 21 21 H 0.97001 * 119.99981 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47067 * 59.99495 * 9 7 2 23 23 H 1.09004 * 109.46908 * 300.00157 * 9 7 2 24 24 H 1.09000 * 117.49996 * 215.00804 * 12 10 9 25 25 H 1.08999 * 117.49664 * 0.02562 * 12 10 9 26 26 H 1.08996 * 109.47097 * 60.00450 * 15 13 10 27 27 H 1.09002 * 109.46864 * 300.00252 * 16 15 13 28 28 H 1.09002 * 109.46851 * 59.99816 * 16 15 13 29 29 H 1.08996 * 109.47097 * 300.00368 * 17 16 15 30 30 H 1.09001 * 109.47293 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.47259 * 179.97438 * 18 17 16 32 32 H 1.09002 * 109.46991 * 59.99777 * 18 17 16 33 33 H 1.09003 * 109.47368 * 299.99923 * 19 18 17 34 34 H 1.09003 * 109.47794 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47593 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.46983 * 60.00367 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 1 3.3705 -3.3649 0.4855 12 6 4.8236 -3.1032 -1.2142 13 6 5.5319 -2.8517 0.1192 14 1 6.1622 -1.9655 0.1949 15 6 6.0126 -4.0726 0.9059 16 6 5.5042 -3.9839 2.3463 17 6 5.9845 -5.2051 3.1328 18 6 7.5140 -5.2423 3.1333 19 6 8.0225 -5.3311 1.6931 20 6 7.5422 -4.1098 0.9064 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6799 0.8911 23 1 3.8753 -0.6803 -0.8889 24 1 4.7001 -4.1387 -1.5314 25 1 4.9882 -2.3824 -2.0152 26 1 5.6277 -4.9797 0.4400 27 1 5.8892 -3.0767 2.8122 28 1 4.4145 -3.9578 2.3459 29 1 5.5992 -6.1119 2.6667 30 1 5.6226 -5.1416 4.1591 31 1 7.8562 -6.1121 3.6941 32 1 7.8994 -4.3354 3.5994 33 1 7.6371 -6.2379 1.2269 34 1 9.1122 -5.3571 1.6933 35 1 7.9048 -4.1728 -0.1196 36 1 7.9275 -3.2029 1.3725 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260982864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -20.049173 kcal Electronic energy + Delta-G solvation = -13690.679735 eV Core-core repulsion = 11559.660712 eV Total energy + Delta-G solvation = -2131.019023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -38.96749 -36.37262 -32.71850 -30.72014 -30.53086 -28.50876 -23.31441 -22.76444 -22.34133 -20.13226 -19.56407 -19.23856 -16.65196 -15.56662 -14.47311 -14.23613 -14.03279 -13.94244 -13.44454 -12.99860 -12.45609 -12.36409 -12.07164 -11.98062 -11.37895 -11.21862 -11.01979 -10.90130 -10.64066 -10.46003 -10.32687 -10.01603 -9.89744 -9.80119 -9.28120 -9.06459 -8.72745 -8.46491 -6.00872 -3.97776 3.32593 3.39868 3.43917 4.43579 4.48030 4.74033 4.86444 4.92358 5.22645 5.31339 5.40391 5.48152 5.56443 5.62306 5.64039 5.70841 5.78608 5.87021 5.88468 6.05519 6.07420 6.20861 6.25809 6.28180 6.33608 6.41141 6.54776 6.66571 6.70139 6.82992 6.92512 7.34129 7.43343 7.82926 8.59161 9.04566 9.61680 11.12751 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.048580 B = 0.006598 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.226796 B = 4242.701220 C = 4342.615179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.012 3.988 10 C -0.103 4.103 11 H 0.096 0.904 12 C -0.183 4.183 13 C -0.167 4.167 14 H 0.094 0.906 15 C -0.050 4.050 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.111 4.111 21 H 0.262 0.738 22 H 0.020 0.980 23 H 0.012 0.988 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.172 -8.830 3.696 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.025 4.025 10 C -0.122 4.122 11 H 0.114 0.886 12 C -0.220 4.220 13 C -0.185 4.185 14 H 0.112 0.888 15 C -0.069 4.069 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.148 4.148 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.030 0.970 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.016 -8.710 3.699 17.749 hybrid contribution 0.319 0.944 -0.115 1.003 sum 15.335 -7.767 3.585 17.560 Atomic orbital electron populations 1.69913 1.06263 1.26785 1.51483 1.25019 0.94725 0.99084 0.94743 0.86800 0.80396 0.83759 0.78468 1.20354 1.21386 1.19035 1.21139 0.89331 0.94407 1.50254 0.91006 1.19231 0.97031 0.90115 0.96117 1.22467 0.90399 1.00216 0.99082 0.88604 1.23074 1.06157 1.01031 0.91694 1.22462 0.97224 0.98945 0.99887 0.88794 1.20664 0.94449 0.96681 0.95085 1.21561 1.01246 0.97538 0.94767 1.21554 0.95299 0.98836 1.00041 1.21536 0.96182 1.01299 0.96632 1.21536 0.99706 0.98633 0.95757 1.21556 0.95717 0.97832 0.99727 0.92799 0.96212 0.96981 0.90045 0.89607 0.91720 0.92050 0.91298 0.92299 0.92299 0.92618 0.92180 0.92257 0.92522 0.92222 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.51 -14.93 9.63 -34.44 -0.33 -15.26 16 8 H 0.07 2.24 7.92 -52.49 -0.42 1.82 16 9 C 0.01 0.30 4.32 -27.88 -0.12 0.18 16 10 C -0.10 -2.12 4.90 -90.62 -0.44 -2.56 16 11 H 0.10 2.02 7.47 -51.93 -0.39 1.63 16 12 C -0.18 -3.21 9.83 -26.69 -0.26 -3.47 16 13 C -0.17 -2.78 4.87 -90.59 -0.44 -3.22 16 14 H 0.09 1.58 8.11 -51.92 -0.42 1.16 16 15 C -0.05 -0.70 2.34 -90.62 -0.21 -0.91 16 16 C -0.11 -1.58 5.04 -26.73 -0.13 -1.71 16 17 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 18 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 19 C -0.12 -1.23 5.92 -26.74 -0.16 -1.38 16 20 C -0.11 -1.32 5.19 -26.73 -0.14 -1.46 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 23 H 0.01 0.29 7.30 -51.93 -0.38 -0.09 16 24 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 25 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 26 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.06 7.29 -51.93 -0.38 0.68 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -30.00 282.42 -8.87 -38.87 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.57 Total: -2.10 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: -2.66 Total: -30.89 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.77 Total: -27.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.00 -8.87 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.818 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds