Wall clock time and date at job start Mon Mar 30 2020 02:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00083 * 2 1 4 4 H 1.48497 * 109.46944 * 270.00565 * 3 2 1 5 5 H 1.48508 * 109.46911 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00218 * 3 2 1 7 7 C 1.37876 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99556 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00129 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47020 * 180.02562 * 9 7 2 11 11 C 1.53775 * 113.61400 * 174.99872 * 10 9 7 12 12 C 1.53787 * 87.08185 * 89.19694 * 11 10 9 13 13 C 1.53002 * 113.61325 * 139.97780 * 12 11 10 14 14 C 1.54892 * 110.59807 * 64.85032 * 13 12 11 15 15 C 1.54888 * 102.74611 * 156.67207 * 14 13 12 16 16 C 1.54265 * 104.19721 * 322.05788 * 15 14 13 17 17 C 1.53873 * 106.59997 * 23.61451 * 16 15 14 18 18 C 1.53782 * 87.16851 * 25.39051 * 12 11 10 19 19 H 0.97004 * 119.99898 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47110 * 59.99677 * 9 7 2 21 21 H 1.09003 * 109.46668 * 299.99554 * 9 7 2 22 22 H 1.08999 * 112.84929 * 43.79926 * 10 9 7 23 23 H 1.08995 * 113.61539 * 334.65164 * 11 10 9 24 24 H 1.08996 * 113.61727 * 203.74597 * 11 10 9 25 25 H 1.08994 * 113.61386 * 270.80258 * 12 11 10 26 26 H 1.09002 * 110.43771 * 302.23257 * 13 12 11 27 27 H 1.08992 * 110.75663 * 274.99068 * 14 13 12 28 28 H 1.09000 * 110.75339 * 38.36092 * 14 13 12 29 29 H 1.09007 * 110.48520 * 203.37936 * 15 14 13 30 30 H 1.08998 * 110.59686 * 80.79466 * 15 14 13 31 31 H 1.08993 * 110.03585 * 264.31946 * 16 15 14 32 32 H 1.09006 * 110.07186 * 142.91875 * 16 15 14 33 33 H 1.09002 * 110.03017 * 240.71676 * 17 16 15 34 34 H 1.08996 * 110.07624 * 119.30418 * 17 16 15 35 35 H 1.09000 * 113.61659 * 89.16338 * 18 12 11 36 36 H 1.09000 * 113.61075 * 220.05738 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5502 -2.7493 -0.1258 12 6 5.6007 -2.6785 1.4096 13 6 6.6285 -3.6249 2.0333 14 6 8.0649 -3.2182 1.6204 15 6 8.9307 -3.8260 2.7517 16 6 8.0878 -3.6177 4.0268 17 6 6.6239 -3.4899 3.5701 18 6 4.1689 -3.2396 1.4065 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6803 0.8888 21 1 3.8745 -0.6800 -0.8912 22 1 3.4789 -3.2768 -0.6977 23 1 6.0128 -1.8938 -0.6177 24 1 5.8864 -3.7040 -0.5301 25 1 5.6707 -1.6624 1.7978 26 1 6.4246 -4.6548 1.7403 27 1 8.3276 -3.6536 0.6564 28 1 8.1672 -2.1332 1.5962 29 1 9.8804 -3.2968 2.8315 30 1 9.1006 -4.8882 2.5760 31 1 8.4008 -2.7066 4.5367 32 1 8.1979 -4.4741 4.6921 33 1 6.2265 -2.5167 3.8581 34 1 6.0231 -4.2842 4.0129 35 1 4.1266 -4.3286 1.4219 36 1 3.5180 -2.7792 2.1498 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:17 Heat of formation + Delta-G solvation = -17.572152 kcal Electronic energy + Delta-G solvation = -13780.797207 eV Core-core repulsion = 11649.885596 eV Total energy + Delta-G solvation = -2130.911611 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.35652 -36.87267 -32.73365 -30.16669 -28.66229 -27.96808 -24.96610 -23.61326 -21.54044 -20.33868 -19.71630 -17.85112 -16.68355 -15.66692 -15.34205 -14.38559 -14.15073 -13.47855 -13.30754 -12.70271 -12.52552 -12.14637 -12.03119 -11.65170 -11.25941 -11.18500 -11.00664 -10.81845 -10.64744 -10.50765 -10.30055 -10.17498 -9.81527 -9.57554 -9.32179 -9.16135 -8.91165 -8.48436 -5.99686 -3.96371 3.33180 3.40421 3.44440 4.48992 4.61119 4.72089 4.78756 5.25043 5.28488 5.34462 5.41738 5.51761 5.64127 5.67636 5.69344 5.75007 5.78912 5.88321 5.98088 6.04017 6.13026 6.25976 6.28908 6.37350 6.41897 6.46076 6.65743 6.72492 6.79445 6.94835 7.17501 7.33005 7.53708 7.85844 8.61101 9.06643 9.63391 11.14046 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.049171 B = 0.006796 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.304598 B = 4119.277541 C = 4208.928417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.071 0.929 9 C 0.003 3.997 10 C -0.087 4.087 11 C -0.139 4.139 12 C -0.101 4.101 13 C -0.080 4.080 14 C -0.118 4.118 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.128 4.128 19 H 0.262 0.738 20 H 0.017 0.983 21 H 0.012 0.988 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 -6.479 5.142 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.089 0.911 9 C -0.034 4.034 10 C -0.105 4.105 11 C -0.177 4.177 12 C -0.119 4.119 13 C -0.098 4.098 14 C -0.155 4.155 15 C -0.163 4.163 16 C -0.162 4.162 17 C -0.158 4.158 18 C -0.165 4.165 19 H 0.072 0.928 20 H 0.035 0.965 21 H 0.030 0.970 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.995 -6.360 5.154 17.968 hybrid contribution 0.292 0.919 0.007 0.964 sum 16.286 -5.441 5.161 17.930 Atomic orbital electron populations 1.69920 1.06273 1.26735 1.51616 1.25028 0.94705 0.99069 0.94790 0.86808 0.80383 0.83802 0.78471 1.20351 1.21458 1.19049 1.21155 0.89524 0.94347 1.50103 0.91051 1.19421 0.96939 0.90958 0.96108 1.22270 0.93064 0.99113 0.96060 1.23067 0.98556 1.00564 0.95506 1.22553 0.94759 0.98747 0.95863 1.21997 0.94356 0.99071 0.94392 1.22504 0.94691 1.00657 0.97676 1.22360 0.98114 1.00498 0.95342 1.22141 0.95589 1.01081 0.97428 1.22188 0.95815 1.01982 0.95831 1.22945 0.95587 0.98907 0.99080 0.92846 0.96481 0.96996 0.91724 0.92335 0.91359 0.89659 0.91218 0.91892 0.91527 0.92209 0.92029 0.92224 0.92385 0.91647 0.92154 0.91611 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.40 13.96 55.43 0.77 -27.62 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.51 -14.88 9.65 -34.44 -0.33 -15.21 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C 0.00 0.07 3.72 -27.88 -0.10 -0.03 16 10 C -0.09 -1.76 3.78 -89.72 -0.34 -2.10 16 11 C -0.14 -2.30 6.91 -25.92 -0.18 -2.48 16 12 C -0.10 -1.59 2.66 -89.80 -0.24 -1.83 16 13 C -0.08 -1.03 2.58 -88.96 -0.23 -1.26 16 14 C -0.12 -1.36 6.02 -24.74 -0.15 -1.51 16 15 C -0.13 -1.27 6.83 -25.07 -0.17 -1.44 16 16 C -0.12 -1.30 6.80 -25.61 -0.17 -1.47 16 17 C -0.12 -1.46 6.37 -25.61 -0.16 -1.62 16 18 C -0.13 -2.30 7.19 -25.83 -0.19 -2.49 16 19 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 20 H 0.02 0.42 6.45 -51.93 -0.34 0.08 16 21 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 22 H 0.06 1.36 8.12 -51.93 -0.42 0.94 16 23 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 24 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 25 H 0.09 1.44 7.62 -51.93 -0.40 1.05 16 26 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.84 7.77 -51.93 -0.40 0.44 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 36 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 LS Contribution 281.26 15.07 4.24 4.24 Total: -1.00 -30.00 281.26 -8.61 -38.60 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.59 Total: -3.05 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -2.36 Total: -29.62 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 0.77 Total: -27.62 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.00 -8.61 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.029 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds