Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47093 * 240.00118 * 3 2 1 5 5 H 1.48505 * 109.47628 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47288 * 120.00258 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00159 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.37634 * 60.73704 * 9 7 2 11 11 C 1.54138 * 110.32908 * 182.92954 * 9 7 2 12 12 C 1.54206 * 101.70552 * 92.29756 * 11 9 7 13 13 C 1.52159 * 104.83947 * 26.48118 * 12 11 9 14 14 S 1.76539 * 139.26498 * 162.94595 * 13 12 11 15 15 C 1.75566 * 91.14482 * 180.02562 * 14 13 12 16 16 N 1.39613 * 125.20880 * 179.91116 * 15 14 13 17 17 C 1.33330 * 109.58572 * 359.64116 * 15 14 13 18 18 C 1.33672 * 110.67253 * 342.59386 * 13 12 11 19 19 H 0.97008 * 119.99641 * 0.02562 * 1 2 3 20 20 H 1.09005 * 110.98560 * 210.40217 * 11 9 7 21 21 H 1.09006 * 110.98125 * 334.15889 * 11 9 7 22 22 H 1.09003 * 110.37178 * 145.32104 * 12 11 9 23 23 H 1.09002 * 110.36908 * 267.53136 * 12 11 9 24 24 H 0.97001 * 120.00456 * 179.69881 * 16 15 14 25 25 H 0.97005 * 119.99818 * 359.41448 * 16 15 14 26 26 H 1.08003 * 122.28588 * 180.23499 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6290 -2.5782 -0.8911 11 6 2.2332 -3.6846 0.0750 12 6 2.3187 -3.9250 1.5959 13 6 0.9956 -3.4134 2.1462 14 16 0.0136 -3.5460 3.6073 15 6 -1.2115 -2.4916 2.9220 16 7 -2.3928 -2.1090 3.5604 17 6 -0.8384 -2.1075 1.7010 18 6 0.3921 -2.6162 1.2590 19 1 -0.4850 0.8401 -0.0004 20 1 1.8297 -4.5587 -0.4362 21 1 3.2065 -3.4113 -0.3327 22 1 2.4310 -4.9886 1.8062 23 1 3.1508 -3.3648 2.0224 24 1 -3.0170 -1.5176 3.1116 25 1 -2.5912 -2.4380 4.4511 26 1 -1.4424 -1.4499 1.0934 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009999.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = 33.565084 kcal Electronic energy + Delta-G solvation = -11679.315992 eV Core-core repulsion = 9656.282629 eV Total energy + Delta-G solvation = -2023.033363 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.21434 -35.15520 -32.41380 -31.33742 -27.63266 -25.46759 -23.86945 -21.12334 -19.62588 -17.81283 -17.08619 -16.07352 -14.92564 -14.53037 -14.18808 -13.78373 -13.19364 -12.31864 -12.19097 -11.31028 -11.11639 -10.94131 -10.64812 -10.45737 -10.31723 -10.29570 -9.89992 -9.57230 -9.25207 -8.82758 -8.37103 -7.16340 -6.41199 -5.96694 -4.03173 2.30004 2.40994 3.01765 3.33720 3.37390 3.40564 4.22622 4.46791 4.56451 5.34130 5.88918 5.98083 6.11604 6.50119 6.55605 6.92662 6.93802 7.02269 7.13518 7.36304 7.58762 7.64738 7.94395 8.02806 8.14230 8.25887 8.37768 8.97309 9.59699 11.07503 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.013827 C = 0.010811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.692057 B = 2024.536406 C = 2589.266291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.059 0.941 9 C 0.096 3.904 10 H 0.033 0.967 11 C -0.114 4.114 12 C -0.015 4.015 13 C -0.281 4.281 14 S 0.021 5.979 15 C 0.078 3.922 16 N -0.862 5.862 17 C -0.170 4.170 18 C 0.007 3.993 19 H 0.259 0.741 20 H 0.049 0.951 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.398 0.602 25 H 0.391 0.609 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 -4.839 4.736 7.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.076 3.924 10 H 0.051 0.949 11 C -0.153 4.153 12 C -0.055 4.055 13 C -0.397 4.397 14 S 0.276 5.724 15 C -0.137 4.137 16 N -0.409 5.409 17 C -0.204 4.204 18 C -0.004 4.004 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.228 0.772 25 H 0.217 0.783 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.862 -5.462 6.073 8.378 hybrid contribution -0.131 2.032 -0.830 2.199 sum -1.993 -3.430 5.243 6.574 Atomic orbital electron populations 1.69938 1.05852 1.26251 1.49305 1.24967 0.94867 0.99015 0.94809 0.86678 0.79665 0.83207 0.78571 1.20218 1.21385 1.20370 1.21016 0.92638 0.89759 1.51171 0.92249 1.18362 0.90785 0.92708 0.90565 0.94893 1.22334 1.00528 0.98470 0.93929 1.20447 0.91872 0.97766 0.95441 1.24932 1.04323 1.13942 0.96502 1.83135 1.15471 1.52796 1.20969 1.21466 0.92558 1.03375 0.96321 1.41376 1.21023 1.58404 1.20053 1.19651 0.99668 1.06053 0.95043 1.20679 0.91288 0.89829 0.98635 0.93154 0.93214 0.91444 0.93610 0.91951 0.77209 0.78256 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 10.44 55.43 0.58 -23.97 15 2 C 0.07 1.83 5.32 -17.82 -0.09 1.74 15 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 7 C -0.51 -13.92 8.53 -34.44 -0.29 -14.22 15 8 H 0.06 1.59 7.58 -52.48 -0.40 1.20 15 9 C 0.10 2.45 2.84 -91.28 -0.26 2.19 15 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 11 C -0.11 -2.39 6.62 -25.51 -0.17 -2.56 15 12 C -0.02 -0.31 6.79 -26.53 -0.18 -0.49 15 13 C -0.28 -6.37 7.34 -35.19 -0.26 -6.63 15 14 S 0.02 0.41 23.34 -107.50 -2.51 -2.10 15 15 C 0.08 1.62 7.60 -15.72 -0.12 1.50 15 16 N -0.86 -13.79 9.13 31.50 0.29 -13.50 15 17 C -0.17 -4.08 9.12 -40.52 -0.37 -4.45 15 18 C 0.01 0.18 5.30 -104.39 -0.55 -0.37 15 19 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 20 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.07 1.35 7.75 -51.93 -0.40 0.94 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.40 5.78 8.94 -40.82 -0.36 5.41 15 25 H 0.39 5.15 8.96 -40.82 -0.37 4.79 15 26 H 0.15 3.70 6.80 -52.48 -0.36 3.34 15 LS Contribution 234.13 15.07 3.53 3.53 Total: -1.00 -29.19 234.13 -8.15 -37.33 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.71 Total: 5.61 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -2.30 Total: -23.29 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.87 Total: -37.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.51 Total: -2.10 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.19 -8.15 -37.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009999.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.898 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds