Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47093 * 240.00118 * 3 2 1 5 5 H 1.48505 * 109.47628 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47288 * 120.00258 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00159 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.37634 * 60.73704 * 9 7 2 11 11 C 1.54138 * 110.32908 * 182.92954 * 9 7 2 12 12 C 1.54206 * 101.70552 * 92.29756 * 11 9 7 13 13 C 1.52159 * 104.83947 * 26.48118 * 12 11 9 14 14 S 1.76539 * 139.26498 * 162.94595 * 13 12 11 15 15 C 1.75566 * 91.14482 * 180.02562 * 14 13 12 16 16 N 1.39613 * 125.20880 * 179.91116 * 15 14 13 17 17 C 1.33330 * 109.58572 * 359.64116 * 15 14 13 18 18 C 1.33672 * 110.67253 * 342.59386 * 13 12 11 19 19 H 0.97008 * 119.99641 * 0.02562 * 1 2 3 20 20 H 1.09005 * 110.98560 * 210.40217 * 11 9 7 21 21 H 1.09006 * 110.98125 * 334.15889 * 11 9 7 22 22 H 1.09003 * 110.37178 * 145.32104 * 12 11 9 23 23 H 1.09002 * 110.36908 * 267.53136 * 12 11 9 24 24 H 0.97001 * 120.00456 * 179.69881 * 16 15 14 25 25 H 0.97005 * 119.99818 * 359.41448 * 16 15 14 26 26 H 1.08003 * 122.28588 * 180.23499 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6290 -2.5782 -0.8911 11 6 2.2332 -3.6846 0.0750 12 6 2.3187 -3.9250 1.5959 13 6 0.9956 -3.4134 2.1462 14 16 0.0136 -3.5460 3.6073 15 6 -1.2115 -2.4916 2.9220 16 7 -2.3928 -2.1090 3.5604 17 6 -0.8384 -2.1075 1.7010 18 6 0.3921 -2.6162 1.2590 19 1 -0.4850 0.8401 -0.0004 20 1 1.8297 -4.5587 -0.4362 21 1 3.2065 -3.4113 -0.3327 22 1 2.4310 -4.9886 1.8062 23 1 3.1508 -3.3648 2.0224 24 1 -3.0170 -1.5176 3.1116 25 1 -2.5912 -2.4380 4.4511 26 1 -1.4424 -1.4499 1.0934 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009999.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = 15.364394 kcal Electronic energy + Delta-G solvation = -11680.105233 eV Core-core repulsion = 9656.282629 eV Total energy + Delta-G solvation = -2023.822604 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.94584 -36.75983 -34.43902 -32.94490 -29.51869 -27.14851 -25.81425 -22.78606 -21.36608 -19.56450 -18.74923 -17.98301 -16.52100 -16.40964 -15.84458 -15.49909 -14.91788 -14.16221 -13.94193 -13.12897 -12.92414 -12.77527 -12.48014 -12.15083 -12.11488 -12.04485 -11.63514 -11.38102 -11.11225 -10.51323 -10.44061 -8.83324 -8.06089 -7.96958 -6.16079 0.65650 0.71642 1.30895 1.41513 1.43444 1.49358 2.38386 2.50157 3.14115 3.27411 4.21085 4.32058 4.51361 4.82819 4.98981 5.23438 5.29315 5.31684 5.36541 5.56319 5.71465 5.85328 5.92741 6.32067 6.35647 6.50162 6.90883 6.99359 7.48806 8.99628 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.013827 C = 0.010811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.692057 B = 2024.536406 C = 2589.266291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.084 3.916 10 H -0.004 1.004 11 C -0.107 4.107 12 C -0.012 4.012 13 C -0.299 4.299 14 S 0.091 5.909 15 C 0.090 3.910 16 N -0.843 5.843 17 C -0.216 4.216 18 C -0.027 4.027 19 H 0.256 0.744 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.407 0.593 25 H 0.408 0.592 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -5.473 6.422 8.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.064 3.936 10 H 0.014 0.986 11 C -0.145 4.145 12 C -0.052 4.052 13 C -0.416 4.416 14 S 0.347 5.653 15 C -0.128 4.128 16 N -0.390 5.390 17 C -0.251 4.251 18 C -0.039 4.039 19 H 0.065 0.935 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.238 0.762 25 H 0.238 0.762 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.441 -6.099 7.774 9.985 hybrid contribution -0.362 2.192 -1.303 2.575 sum -1.803 -3.907 6.471 7.771 Atomic orbital electron populations 1.70105 1.06893 1.26566 1.49776 1.25714 0.95724 1.02065 0.94787 0.85752 0.78496 0.79536 0.78667 1.19310 1.21212 1.20304 1.21341 0.92790 0.91102 1.51219 0.92340 1.18395 0.91463 0.93925 0.89848 0.98582 1.22283 0.99683 0.97305 0.95258 1.20474 0.90720 0.99666 0.94325 1.25366 1.05130 1.13261 0.97827 1.82789 1.13211 1.51199 1.18146 1.21668 0.93639 1.01997 0.95532 1.41394 1.19474 1.57588 1.20585 1.19488 1.00391 1.08432 0.96751 1.20666 0.92349 0.91778 0.99067 0.93455 0.91458 0.90778 0.90335 0.91939 0.76241 0.76157 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.79 10.44 21.45 0.22 -51.56 15 2 C 0.02 0.99 5.32 84.65 0.45 1.44 15 3 Si 0.95 44.36 29.54 68.60 2.03 46.39 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 15 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 7 C -0.53 -29.42 8.53 25.60 0.22 -29.20 15 8 H 0.06 3.17 7.58 -2.91 -0.02 3.15 15 9 C 0.08 4.40 2.84 -11.22 -0.03 4.37 15 10 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 15 11 C -0.11 -4.40 6.62 31.39 0.21 -4.20 15 12 C -0.01 -0.47 6.79 30.72 0.21 -0.26 15 13 C -0.30 -13.17 7.34 25.12 0.18 -12.99 15 14 S 0.09 3.34 23.34 -56.49 -1.32 2.02 15 15 C 0.09 3.59 7.60 82.34 0.63 4.21 15 16 N -0.84 -25.05 9.13 -54.25 -0.50 -25.55 15 17 C -0.22 -10.54 9.12 21.66 0.20 -10.34 15 18 C -0.03 -1.37 5.30 -19.72 -0.10 -1.48 15 19 H 0.26 14.23 8.31 -92.70 -0.77 13.46 15 20 H 0.07 2.49 8.14 -2.38 -0.02 2.47 15 21 H 0.07 2.90 7.75 -2.38 -0.02 2.88 15 22 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.41 11.12 8.94 -92.71 -0.83 10.29 15 25 H 0.41 9.41 8.96 -92.70 -0.83 8.58 15 26 H 0.12 6.34 6.80 -2.91 -0.02 6.32 15 Total: -1.00 -63.25 234.13 1.95 -61.31 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.45 Total: 15.83 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 1.96 Total: -48.44 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -0.27 Total: -77.11 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.32 Total: 2.02 kcal Total: -63.25 1.95 -61.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009999.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.670 kcal (2) G-P(sol) polarization free energy of solvation -63.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds