Wall clock time and date at job start Mon Mar 30 2020 02:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36764 * 126.44866 * 2 1 4 4 N 1.28405 * 114.42381 * 185.25162 * 3 2 1 5 5 C 1.48258 * 109.82737 * 1.07457 * 4 3 2 6 6 H 1.08998 * 109.79854 * 236.48032 * 5 4 3 7 7 C 1.50998 * 107.98455 * 116.70553 * 5 4 3 8 8 C 1.50718 * 115.23411 * 212.62515 * 7 5 4 9 9 H 1.08996 * 108.91123 * 170.96602 * 8 7 5 10 10 C 1.50698 * 108.90667 * 289.49567 * 8 7 5 11 11 H 1.08000 * 120.00320 * 5.51495 * 10 8 7 12 12 C 1.37879 * 119.99947 * 185.52155 * 10 8 7 13 13 N 1.31520 * 119.99856 * 9.65921 * 12 10 8 14 14 Si 1.86796 * 120.00286 * 189.66244 * 12 10 8 15 15 H 1.48504 * 109.47094 * 94.98969 * 14 12 10 16 16 H 1.48494 * 109.47465 * 214.99438 * 14 12 10 17 17 H 1.48498 * 109.47121 * 334.99804 * 14 12 10 18 18 C 1.51490 * 112.33261 * 50.22859 * 8 7 5 19 19 C 1.50204 * 112.15632 * 304.55965 * 18 8 7 20 20 C 1.46507 * 126.44874 * 180.02562 * 2 1 3 21 21 H 1.08999 * 105.36104 * 282.27593 * 20 2 1 22 22 H 1.09001 * 109.46902 * 269.99646 * 1 2 3 23 23 H 1.09000 * 109.47449 * 29.99568 * 1 2 3 24 24 H 1.08995 * 109.47204 * 149.99271 * 1 2 3 25 25 H 1.08008 * 122.78494 * 5.20923 * 3 2 1 26 26 H 1.09005 * 108.32942 * 334.11636 * 7 5 4 27 27 H 1.08999 * 108.32946 * 91.31323 * 7 5 4 28 28 H 0.96991 * 119.99689 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.02071 * 64.49230 * 18 8 7 30 30 H 1.09000 * 109.01473 * 183.30762 * 18 8 7 31 31 H 1.09001 * 107.51548 * 282.42615 * 19 18 8 32 32 H 1.08994 * 108.36926 * 165.98134 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2775 1.1001 0.0000 4 7 3.5294 0.8355 -0.1070 5 6 3.7253 -0.6291 -0.2277 6 1 4.3936 -0.9783 0.5593 7 6 4.3357 -0.9079 -1.5804 8 6 3.9320 -2.2163 -2.2102 9 1 4.2956 -2.2410 -3.2374 10 6 4.5693 -3.3452 -1.4418 11 1 5.1244 -3.1382 -0.5388 12 6 4.4440 -4.6425 -1.8918 13 7 3.9368 -4.8796 -3.0818 14 14 4.9945 -6.0633 -0.8112 15 1 3.8305 -6.5888 -0.0534 16 1 5.5596 -7.1417 -1.6613 17 1 6.0310 -5.5887 0.1404 18 6 2.4300 -2.4131 -2.2162 19 6 1.8383 -2.2999 -0.8402 20 6 2.3353 -1.1785 -0.0005 21 1 2.3271 -1.5440 1.0263 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.8975 2.1078 0.0824 26 1 4.0540 -0.1007 -2.2566 27 1 5.4205 -0.9014 -1.4748 28 1 3.8483 -5.7922 -3.3982 29 1 1.9744 -1.6509 -2.8484 30 1 2.2022 -3.3964 -2.6276 31 1 2.0427 -3.2342 -0.3174 32 1 0.7574 -2.1994 -0.9383 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261010643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:46 Heat of formation + Delta-G solvation = 35.363209 kcal Electronic energy + Delta-G solvation = -14313.536552 eV Core-core repulsion = 12081.380047 eV Total energy + Delta-G solvation = -2232.156505 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.24629 -35.81626 -33.26337 -32.09386 -29.70028 -28.60139 -26.13025 -24.68363 -22.11836 -21.09446 -19.86918 -17.78231 -16.10831 -15.77420 -15.34706 -14.57612 -14.25768 -13.71802 -13.27550 -13.06492 -12.46506 -12.07200 -11.84840 -11.59948 -11.25262 -11.19617 -10.90815 -10.55869 -10.29759 -10.14892 -9.77321 -9.59082 -9.33577 -8.81876 -8.61295 -8.26802 -7.28682 -5.97547 -3.98249 3.08230 3.31071 3.39248 3.42754 3.58579 4.47286 4.93674 5.17812 5.30998 5.35752 5.47461 5.66361 5.74043 5.88748 6.12969 6.23080 6.28810 6.50083 6.63560 6.77934 6.81160 7.01093 7.06745 7.23908 7.25740 7.53026 7.78967 7.96172 8.01644 8.11134 8.45569 8.50944 9.05326 9.64424 11.10954 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.010433 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.721777 B = 2683.051557 C = 2810.244831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.651 5.651 3 C 0.329 3.671 4 N -0.576 5.576 5 C 0.077 3.923 6 H 0.083 0.917 7 C -0.082 4.082 8 C 0.041 3.959 9 H 0.035 0.965 10 C -0.505 4.505 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.881 3.119 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.093 4.093 19 C -0.098 4.098 20 C 0.136 3.864 21 H 0.036 0.964 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.173 0.827 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.259 0.741 29 H 0.011 0.989 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 7.364 5.073 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.376 5.376 3 C 0.030 3.970 4 N -0.302 5.302 5 C -0.032 4.032 6 H 0.101 0.899 7 C -0.120 4.120 8 C 0.022 3.978 9 H 0.053 0.947 10 C -0.544 4.544 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.709 3.291 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.131 4.131 19 C -0.136 4.136 20 C 0.032 3.968 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.190 0.810 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.619 7.533 4.939 11.179 hybrid contribution -0.499 -1.463 0.646 1.676 sum -7.119 6.070 5.585 10.896 Atomic orbital electron populations 1.21298 0.78816 1.02469 1.00525 1.48363 1.05100 1.05685 1.78471 1.24592 0.88297 0.92799 0.91327 1.74765 1.14765 1.14690 1.25984 1.21645 0.94156 0.87368 1.00047 0.89879 1.20623 0.99598 0.98579 0.93230 1.17973 0.91991 0.90966 0.96843 0.94716 1.21235 1.32578 0.91179 1.09359 0.92788 1.24943 0.95555 0.98731 0.94649 1.69951 1.46331 1.20017 1.16663 0.86750 0.78824 0.82671 0.80854 1.20858 1.21402 1.19896 1.20515 0.98304 1.01229 0.93053 1.20081 0.98051 0.96728 0.98759 1.20309 0.90716 0.86611 0.99176 0.94619 0.93777 0.91869 0.91234 0.80977 0.94859 0.92929 0.93164 0.97045 0.89961 0.91294 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.30 11.07 59.84 0.66 1.97 16 2 N -0.65 -10.32 3.37 -180.13 -0.61 -10.93 16 3 C 0.33 5.18 12.21 -90.49 -1.11 4.07 16 4 N -0.58 -11.08 11.04 -56.76 -0.63 -11.71 16 5 C 0.08 1.61 3.73 -68.89 -0.26 1.35 16 6 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 7 C -0.08 -1.87 4.80 -28.88 -0.14 -2.01 16 8 C 0.04 1.03 2.27 -93.68 -0.21 0.82 16 9 H 0.03 0.97 8.10 -51.93 -0.42 0.55 16 10 C -0.51 -13.63 7.54 -34.44 -0.26 -13.89 16 11 H 0.05 1.46 7.75 -52.49 -0.41 1.06 16 12 C 0.06 1.70 5.13 -17.82 -0.09 1.61 16 13 N -0.89 -25.34 11.90 55.43 0.66 -24.69 16 14 Si 0.88 21.16 29.55 -169.99 -5.02 16.14 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 C -0.09 -2.17 5.21 -28.89 -0.15 -2.32 16 19 C -0.10 -1.99 5.07 -30.25 -0.15 -2.14 16 20 C 0.14 2.61 3.16 -70.97 -0.22 2.38 16 21 H 0.04 0.68 8.07 -51.93 -0.42 0.27 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.83 6.18 -51.93 -0.32 0.51 16 25 H 0.17 1.95 8.06 -52.48 -0.42 1.52 16 26 H 0.03 0.75 7.87 -51.93 -0.41 0.34 16 27 H 0.05 1.21 8.05 -51.93 -0.42 0.80 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 2.13 6.45 -51.93 -0.34 1.79 16 31 H 0.07 1.49 7.93 -51.93 -0.41 1.08 16 32 H 0.04 0.76 5.83 -51.93 -0.30 0.46 16 LS Contribution 252.54 15.07 3.81 3.81 Total: -1.00 -29.65 252.54 -8.41 -38.06 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.69 Total: -2.54 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.93 Total: -8.15 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.57 Total: -47.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.65 -8.41 -38.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.422 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds