Wall clock time and date at job start Mon Mar 30 2020 02:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36764 * 126.44866 * 2 1 4 4 N 1.28405 * 114.42381 * 185.25162 * 3 2 1 5 5 C 1.48258 * 109.82737 * 1.07457 * 4 3 2 6 6 H 1.08998 * 109.79854 * 236.48032 * 5 4 3 7 7 C 1.50998 * 107.98455 * 116.70553 * 5 4 3 8 8 C 1.50718 * 115.23411 * 212.62515 * 7 5 4 9 9 H 1.08996 * 108.91123 * 170.96602 * 8 7 5 10 10 C 1.50698 * 108.90667 * 289.49567 * 8 7 5 11 11 H 1.08000 * 120.00320 * 5.51495 * 10 8 7 12 12 C 1.37879 * 119.99947 * 185.52155 * 10 8 7 13 13 N 1.31520 * 119.99856 * 9.65921 * 12 10 8 14 14 Si 1.86796 * 120.00286 * 189.66244 * 12 10 8 15 15 H 1.48504 * 109.47094 * 94.98969 * 14 12 10 16 16 H 1.48494 * 109.47465 * 214.99438 * 14 12 10 17 17 H 1.48498 * 109.47121 * 334.99804 * 14 12 10 18 18 C 1.51490 * 112.33261 * 50.22859 * 8 7 5 19 19 C 1.50204 * 112.15632 * 304.55965 * 18 8 7 20 20 C 1.46507 * 126.44874 * 180.02562 * 2 1 3 21 21 H 1.08999 * 105.36104 * 282.27593 * 20 2 1 22 22 H 1.09001 * 109.46902 * 269.99646 * 1 2 3 23 23 H 1.09000 * 109.47449 * 29.99568 * 1 2 3 24 24 H 1.08995 * 109.47204 * 149.99271 * 1 2 3 25 25 H 1.08008 * 122.78494 * 5.20923 * 3 2 1 26 26 H 1.09005 * 108.32942 * 334.11636 * 7 5 4 27 27 H 1.08999 * 108.32946 * 91.31323 * 7 5 4 28 28 H 0.96991 * 119.99689 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.02071 * 64.49230 * 18 8 7 30 30 H 1.09000 * 109.01473 * 183.30762 * 18 8 7 31 31 H 1.09001 * 107.51548 * 282.42615 * 19 18 8 32 32 H 1.08994 * 108.36926 * 165.98134 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2775 1.1001 0.0000 4 7 3.5294 0.8355 -0.1070 5 6 3.7253 -0.6291 -0.2277 6 1 4.3936 -0.9783 0.5593 7 6 4.3357 -0.9079 -1.5804 8 6 3.9320 -2.2163 -2.2102 9 1 4.2956 -2.2410 -3.2374 10 6 4.5693 -3.3452 -1.4418 11 1 5.1244 -3.1382 -0.5388 12 6 4.4440 -4.6425 -1.8918 13 7 3.9368 -4.8796 -3.0818 14 14 4.9945 -6.0633 -0.8112 15 1 3.8305 -6.5888 -0.0534 16 1 5.5596 -7.1417 -1.6613 17 1 6.0310 -5.5887 0.1404 18 6 2.4300 -2.4131 -2.2162 19 6 1.8383 -2.2999 -0.8402 20 6 2.3353 -1.1785 -0.0005 21 1 2.3271 -1.5440 1.0263 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.8975 2.1078 0.0824 26 1 4.0540 -0.1007 -2.2566 27 1 5.4205 -0.9014 -1.4748 28 1 3.8483 -5.7922 -3.3982 29 1 1.9744 -1.6509 -2.8484 30 1 2.2022 -3.3964 -2.6276 31 1 2.0427 -3.2342 -0.3174 32 1 0.7574 -2.1994 -0.9383 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:45 Heat of formation + Delta-G solvation = 17.003434 kcal Electronic energy + Delta-G solvation = -14314.332691 eV Core-core repulsion = 12081.380047 eV Total energy + Delta-G solvation = -2232.952644 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.71663 -37.59254 -34.62208 -34.09221 -31.35747 -30.25731 -27.50777 -26.52920 -23.79342 -22.82572 -21.23070 -19.59719 -17.75745 -17.43246 -16.82222 -16.50709 -15.77233 -15.36670 -14.87613 -14.46693 -14.11354 -13.73785 -13.36997 -13.10176 -13.00347 -12.80831 -12.65303 -12.36782 -12.06688 -11.82799 -11.57978 -11.26751 -11.21394 -10.61774 -10.46136 -10.34830 -8.65531 -8.09625 -6.16904 1.39704 1.42045 1.51606 1.82057 2.37613 2.44720 3.20262 3.61203 3.79903 3.94312 4.22317 4.30297 4.49191 4.56807 4.66054 4.76178 4.76300 4.90983 4.97000 5.07223 5.16527 5.27481 5.35761 5.37463 5.60482 5.67114 5.70341 5.92915 6.12084 6.40265 6.83783 6.92257 7.15432 7.48818 8.98602 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.010433 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.721777 B = 2683.051557 C = 2810.244831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.649 5.649 3 C 0.343 3.657 4 N -0.616 5.616 5 C 0.076 3.924 6 H 0.066 0.934 7 C -0.070 4.070 8 C 0.040 3.960 9 H -0.006 1.006 10 C -0.515 4.515 11 H 0.048 0.952 12 C 0.018 3.982 13 N -0.919 5.919 14 Si 0.942 3.058 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.271 1.271 18 C -0.083 4.083 19 C -0.089 4.089 20 C 0.135 3.865 21 H 0.038 0.962 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.225 0.775 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 8.305 6.471 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.373 5.373 3 C 0.046 3.954 4 N -0.343 5.343 5 C -0.034 4.034 6 H 0.084 0.916 7 C -0.109 4.109 8 C 0.022 3.978 9 H 0.012 0.988 10 C -0.553 4.553 11 H 0.066 0.934 12 C -0.181 4.181 13 N -0.558 5.558 14 Si 0.768 3.232 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.121 4.121 19 C -0.128 4.128 20 C 0.030 3.970 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.241 0.759 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.373 8.484 6.347 13.505 hybrid contribution -0.013 -1.700 0.170 1.709 sum -8.386 6.784 6.517 12.602 Atomic orbital electron populations 1.21626 0.75832 1.03799 1.02336 1.48508 1.06688 1.04310 1.77753 1.25416 0.87297 0.94552 0.88138 1.74761 1.17085 1.12779 1.29720 1.21440 0.94812 0.89452 0.97668 0.91560 1.20438 0.98780 0.96932 0.94706 1.17928 0.93314 0.92047 0.94559 0.98752 1.21403 1.32668 0.92051 1.09190 0.93405 1.25626 0.95732 1.01041 0.95680 1.70070 1.47265 1.20524 1.17987 0.85782 0.78655 0.79550 0.79195 1.19859 1.21222 1.19567 1.20318 0.96982 0.99666 0.95177 1.19952 0.99649 0.96651 0.96516 1.20052 0.90656 0.87594 0.98693 0.94441 0.91667 0.88804 0.91621 0.75945 0.95129 0.94536 0.93095 0.96484 0.92772 0.93062 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.95 11.07 127.77 1.41 3.37 16 2 N -0.65 -18.25 3.37 -723.80 -2.44 -20.69 16 3 C 0.34 9.56 12.21 180.30 2.20 11.76 16 4 N -0.62 -22.67 11.04 -333.49 -3.68 -26.35 16 5 C 0.08 3.16 3.73 43.41 0.16 3.32 16 6 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 7 C -0.07 -3.28 4.80 29.20 0.14 -3.14 16 8 C 0.04 2.10 2.27 -12.78 -0.03 2.07 16 9 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 10 C -0.51 -28.50 7.54 25.60 0.19 -28.31 16 11 H 0.05 2.65 7.75 -2.91 -0.02 2.63 16 12 C 0.02 0.98 5.13 84.65 0.43 1.41 16 13 N -0.92 -53.45 11.90 21.45 0.26 -53.19 16 14 Si 0.94 43.76 29.55 68.60 2.03 45.79 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C -0.08 -3.94 5.21 29.20 0.15 -3.78 16 19 C -0.09 -3.54 5.07 28.32 0.14 -3.39 16 20 C 0.14 4.98 3.16 43.02 0.14 5.12 16 21 H 0.04 1.38 8.07 -2.39 -0.02 1.36 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.29 6.18 -2.39 -0.01 1.28 16 25 H 0.22 3.78 8.06 -2.91 -0.02 3.76 16 26 H 0.03 1.40 7.87 -2.38 -0.02 1.38 16 27 H 0.04 1.75 8.05 -2.39 -0.02 1.73 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 2.86 6.45 -2.39 -0.02 2.84 16 31 H 0.05 2.19 7.93 -2.39 -0.02 2.18 16 32 H 0.07 2.38 5.83 -2.39 -0.01 2.37 16 Total: -1.00 -65.30 252.54 2.20 -63.10 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.09 Total: 2.92 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.95 Total: -11.57 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -5.87 Total: -100.23 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -65.30 2.20 -63.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.104 kcal (2) G-P(sol) polarization free energy of solvation -65.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds