Wall clock time and date at job start Mon Mar 30 2020 02:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48493 * 109.47256 * 269.99965 * 3 2 1 5 5 H 1.48503 * 109.46776 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.46879 * 149.99767 * 3 2 1 7 7 C 1.37878 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99743 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00322 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.54285 * 302.61512 * 9 7 2 11 11 C 1.54893 * 110.48728 * 65.22839 * 9 7 2 12 12 C 1.54887 * 102.75129 * 156.61816 * 11 9 7 13 13 C 1.54268 * 104.19650 * 322.06102 * 12 11 9 14 14 C 1.53873 * 106.59843 * 23.60398 * 13 12 11 15 15 H 1.08994 * 110.03543 * 240.66657 * 14 13 12 16 16 C 1.53003 * 110.02805 * 119.28676 * 14 13 12 17 17 C 1.54267 * 110.48667 * 181.45318 * 16 14 13 18 18 C 1.53876 * 106.59870 * 217.71131 * 17 16 14 19 19 C 1.54261 * 106.59990 * 0.02562 * 18 17 16 20 20 C 1.54888 * 104.19672 * 23.60631 * 19 18 17 21 21 H 0.96996 * 119.99926 * 0.02562 * 1 2 3 22 22 H 1.09000 * 110.75009 * 38.30262 * 11 9 7 23 23 H 1.08997 * 110.91179 * 275.01090 * 11 9 7 24 24 H 1.09001 * 110.48382 * 203.37979 * 12 11 9 25 25 H 1.09005 * 110.59698 * 80.79428 * 12 11 9 26 26 H 1.09003 * 110.03009 * 264.32467 * 13 12 11 27 27 H 1.08998 * 110.07412 * 142.91919 * 13 12 11 28 28 H 1.09004 * 110.54016 * 304.06608 * 16 14 13 29 29 H 1.08995 * 110.03032 * 98.42858 * 17 16 14 30 30 H 1.08998 * 110.03405 * 336.99797 * 17 16 14 31 31 H 1.08998 * 110.02768 * 119.28860 * 18 17 16 32 32 H 1.08994 * 110.03051 * 240.71540 * 18 17 16 33 33 H 1.09000 * 110.48928 * 142.28640 * 19 18 17 34 34 H 1.08999 * 110.48469 * 264.93049 * 19 18 17 35 35 H 1.09005 * 110.75648 * 80.37263 * 20 19 18 36 36 H 1.09004 * 110.75897 * 203.55715 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5837 -2.5555 0.8595 11 6 0.4529 -2.6644 -1.3177 12 6 0.2749 -4.1996 -1.4193 13 6 1.6119 -4.7705 -0.9032 14 6 2.2325 -3.6893 -0.0012 15 1 3.1975 -3.3782 -0.4011 16 6 2.4039 -4.2280 1.4206 17 6 2.9921 -3.1402 2.3429 18 6 3.9667 -3.8527 3.2970 19 6 3.9372 -5.3485 2.9208 20 6 3.4609 -5.3602 1.4470 21 1 -0.4850 0.8400 -0.0004 22 1 1.0236 -2.2847 -2.1652 23 1 -0.5146 -2.1668 -1.2514 24 1 0.1076 -4.4965 -2.4547 25 1 -0.5504 -4.5324 -0.7898 26 1 2.2754 -4.9834 -1.7414 27 1 1.4337 -5.6792 -0.3283 28 1 1.4513 -4.5854 1.8116 29 1 2.1948 -2.6622 2.9120 30 1 3.5258 -2.3970 1.7505 31 1 4.9733 -3.4552 3.1676 32 1 3.6423 -3.7205 4.3291 33 1 4.9338 -5.7823 3.0031 34 1 3.2322 -5.8872 3.5538 35 1 4.2867 -5.1341 0.7724 36 1 3.0095 -6.3197 1.1945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023517.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:06 Heat of formation + Delta-G solvation = -44.843693 kcal Electronic energy + Delta-G solvation = -14400.170441 eV Core-core repulsion = 12268.076247 eV Total energy + Delta-G solvation = -2132.094194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.54743 -35.88473 -32.40554 -29.71517 -28.61140 -27.47205 -25.37017 -23.70029 -20.33863 -19.69446 -18.99928 -18.42535 -16.33573 -15.13229 -14.84531 -14.43023 -13.74197 -13.52036 -12.78874 -12.20132 -12.16376 -11.81096 -11.54393 -11.08417 -10.88897 -10.77451 -10.60845 -10.43338 -10.34136 -10.24437 -9.85389 -9.79975 -9.49540 -9.42591 -9.30474 -8.79021 -8.66441 -8.26643 -5.92106 -3.92823 3.34413 3.41457 3.44203 4.50576 5.14306 5.18665 5.22494 5.40701 5.71700 5.81839 5.86554 5.95997 6.05145 6.06887 6.17025 6.22385 6.29694 6.35260 6.50788 6.58213 6.60756 6.71323 6.74591 6.83078 6.95866 6.98505 7.07729 7.19185 7.29377 7.45287 7.52119 7.81483 7.98713 8.15473 8.57425 9.09310 9.69710 11.17590 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.012037 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.104080 B = 2325.644384 C = 3112.318234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.054 0.946 9 C 0.057 3.943 10 H 0.030 0.970 11 C -0.103 4.103 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.080 4.080 15 H 0.059 0.941 16 C -0.073 4.073 17 C -0.113 4.113 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.121 4.121 21 H 0.257 0.743 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 -8.496 2.480 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.039 3.961 10 H 0.048 0.952 11 C -0.141 4.141 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.099 4.099 15 H 0.078 0.922 16 C -0.091 4.091 17 C -0.150 4.150 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.158 4.158 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.394 -8.367 2.494 9.774 hybrid contribution 0.416 0.984 -0.030 1.068 sum 4.810 -7.383 2.464 9.150 Atomic orbital electron populations 1.69963 1.05811 1.26136 1.51101 1.24961 0.94758 0.98767 0.95501 0.86740 0.79983 0.84180 0.77959 1.20909 1.21441 1.19996 1.21181 0.92515 0.90508 1.49797 0.92828 1.19453 0.92194 0.90978 0.93498 0.95171 1.22448 1.01069 0.90713 0.99877 1.22460 0.96546 0.99413 0.98410 1.22192 0.96889 0.97919 0.98406 1.21961 0.99990 0.95799 0.92124 0.92227 1.21972 0.96922 0.94039 0.96213 1.22130 0.98168 0.97986 0.96725 1.22202 0.99790 0.95203 0.99265 1.22344 0.99985 0.96725 0.97120 1.22602 0.98946 0.98619 0.95666 0.93291 0.93664 0.91867 0.93981 0.93192 0.93543 0.93426 0.92047 0.92159 0.90349 0.92666 0.92848 0.92730 0.92350 0.91924 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 12.29 55.43 0.68 -25.03 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 3 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.50 -13.47 7.35 -34.44 -0.25 -13.72 16 8 H 0.05 1.43 7.00 -52.48 -0.37 1.06 16 9 C 0.06 1.40 1.83 -90.11 -0.16 1.23 16 10 H 0.03 0.81 7.85 -51.93 -0.41 0.41 16 11 C -0.10 -2.44 5.74 -24.74 -0.14 -2.58 16 12 C -0.13 -2.55 6.83 -25.07 -0.17 -2.72 16 13 C -0.12 -2.13 6.14 -25.61 -0.16 -2.29 16 14 C -0.08 -1.64 1.91 -89.50 -0.17 -1.81 16 15 H 0.06 1.27 7.65 -51.93 -0.40 0.87 16 16 C -0.07 -1.32 2.06 -88.95 -0.18 -1.51 16 17 C -0.11 -2.09 5.57 -25.61 -0.14 -2.23 16 18 C -0.13 -1.93 6.80 -25.61 -0.17 -2.10 16 19 C -0.12 -1.71 6.83 -25.08 -0.17 -1.88 16 20 C -0.12 -1.83 5.78 -24.73 -0.14 -1.98 16 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.04 1.10 8.05 -51.93 -0.42 0.69 16 23 H 0.06 1.63 7.56 -51.93 -0.39 1.23 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.79 7.17 -51.93 -0.37 0.42 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.62 6.45 -51.93 -0.34 1.28 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 LS Contribution 274.56 15.07 4.14 4.14 Total: -1.00 -27.39 274.56 -8.63 -36.01 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.46 Total: -1.52 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -1.97 Total: -29.99 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.68 Total: -25.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.39 -8.63 -36.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023517.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.831 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds