Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48493 * 109.47256 * 269.99965 * 3 2 1 5 5 H 1.48503 * 109.46776 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.46879 * 149.99767 * 3 2 1 7 7 C 1.37878 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99743 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00322 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.54285 * 302.61512 * 9 7 2 11 11 C 1.54893 * 110.48728 * 65.22839 * 9 7 2 12 12 C 1.54887 * 102.75129 * 156.61816 * 11 9 7 13 13 C 1.54268 * 104.19650 * 322.06102 * 12 11 9 14 14 C 1.53873 * 106.59843 * 23.60398 * 13 12 11 15 15 H 1.08994 * 110.03543 * 240.66657 * 14 13 12 16 16 C 1.53003 * 110.02805 * 119.28676 * 14 13 12 17 17 C 1.54267 * 110.48667 * 181.45318 * 16 14 13 18 18 C 1.53876 * 106.59870 * 217.71131 * 17 16 14 19 19 C 1.54261 * 106.59990 * 0.02562 * 18 17 16 20 20 C 1.54888 * 104.19672 * 23.60631 * 19 18 17 21 21 H 0.96996 * 119.99926 * 0.02562 * 1 2 3 22 22 H 1.09000 * 110.75009 * 38.30262 * 11 9 7 23 23 H 1.08997 * 110.91179 * 275.01090 * 11 9 7 24 24 H 1.09001 * 110.48382 * 203.37979 * 12 11 9 25 25 H 1.09005 * 110.59698 * 80.79428 * 12 11 9 26 26 H 1.09003 * 110.03009 * 264.32467 * 13 12 11 27 27 H 1.08998 * 110.07412 * 142.91919 * 13 12 11 28 28 H 1.09004 * 110.54016 * 304.06608 * 16 14 13 29 29 H 1.08995 * 110.03032 * 98.42858 * 17 16 14 30 30 H 1.08998 * 110.03405 * 336.99797 * 17 16 14 31 31 H 1.08998 * 110.02768 * 119.28860 * 18 17 16 32 32 H 1.08994 * 110.03051 * 240.71540 * 18 17 16 33 33 H 1.09000 * 110.48928 * 142.28640 * 19 18 17 34 34 H 1.08999 * 110.48469 * 264.93049 * 19 18 17 35 35 H 1.09005 * 110.75648 * 80.37263 * 20 19 18 36 36 H 1.09004 * 110.75897 * 203.55715 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5837 -2.5555 0.8595 11 6 0.4529 -2.6644 -1.3177 12 6 0.2749 -4.1996 -1.4193 13 6 1.6119 -4.7705 -0.9032 14 6 2.2325 -3.6893 -0.0012 15 1 3.1975 -3.3782 -0.4011 16 6 2.4039 -4.2280 1.4206 17 6 2.9921 -3.1402 2.3429 18 6 3.9667 -3.8527 3.2970 19 6 3.9372 -5.3485 2.9208 20 6 3.4609 -5.3602 1.4470 21 1 -0.4850 0.8400 -0.0004 22 1 1.0236 -2.2847 -2.1652 23 1 -0.5146 -2.1668 -1.2514 24 1 0.1076 -4.4965 -2.4547 25 1 -0.5504 -4.5324 -0.7898 26 1 2.2754 -4.9834 -1.7414 27 1 1.4337 -5.6792 -0.3283 28 1 1.4513 -4.5854 1.8116 29 1 2.1948 -2.6622 2.9120 30 1 3.5258 -2.3970 1.7505 31 1 4.9733 -3.4552 3.1676 32 1 3.6423 -3.7205 4.3291 33 1 4.9338 -5.7823 3.0031 34 1 3.2322 -5.8872 3.5538 35 1 4.2867 -5.1341 0.7724 36 1 3.0095 -6.3197 1.1945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023517.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = -57.731892 kcal Electronic energy + Delta-G solvation = -14400.729315 eV Core-core repulsion = 12268.076247 eV Total energy + Delta-G solvation = -2132.653068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.08096 -37.40992 -34.47511 -31.20973 -30.27689 -29.01604 -26.95794 -25.62678 -21.69716 -21.31940 -20.53346 -20.06821 -18.36939 -16.67142 -16.35942 -16.20974 -15.39527 -15.06523 -14.23818 -13.95933 -13.70049 -13.47779 -13.19449 -12.97334 -12.70531 -12.46626 -12.14216 -11.91666 -11.81641 -11.57314 -11.48226 -11.34977 -11.17280 -11.00895 -10.87704 -10.74553 -10.53389 -10.36862 -8.06527 -6.12825 1.38740 1.39918 1.49171 2.45065 3.24255 3.83204 3.90503 3.96578 4.20582 4.29570 4.32322 4.60700 4.71642 4.81249 4.87779 4.92628 4.98205 5.00584 5.05794 5.10992 5.16111 5.18547 5.26746 5.34122 5.39601 5.45043 5.47969 5.56922 5.65260 5.71351 5.73939 5.82786 6.02341 6.10880 6.49256 6.97833 7.52525 9.02540 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.012037 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.104080 B = 2325.644384 C = 3112.318234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.942 3.058 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.049 0.951 9 C 0.052 3.948 10 H -0.005 1.005 11 C -0.102 4.102 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.075 4.075 15 H 0.047 0.953 16 C -0.074 4.074 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.113 4.113 21 H 0.256 0.744 22 H 0.030 0.970 23 H 0.031 0.969 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -10.375 2.611 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.160 4.160 13 C -0.147 4.147 14 C -0.093 4.093 15 H 0.066 0.934 16 C -0.093 4.093 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.151 4.151 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.847 -10.254 2.624 12.092 hybrid contribution -0.061 1.616 -0.064 1.618 sum 5.786 -8.638 2.560 10.707 Atomic orbital electron populations 1.70096 1.07138 1.26695 1.52398 1.25700 0.95532 1.02051 0.95577 0.85792 0.78937 0.80328 0.78060 1.20396 1.21301 1.19266 1.21500 0.92480 0.91884 1.48772 0.93248 1.19403 0.92606 0.92160 0.92445 0.98678 1.22301 0.98935 0.94044 0.98796 1.22390 0.97695 0.95693 1.00200 1.22153 0.95994 0.97783 0.98731 1.21823 0.98172 0.94976 0.94362 0.93401 1.21943 0.97885 0.95089 0.94378 1.22073 0.98012 0.97972 0.97160 1.22171 0.98949 0.96207 0.98760 1.22333 1.01669 0.95398 0.96060 1.22548 0.97778 0.97859 0.96869 0.93480 0.95094 0.94991 0.91618 0.92711 0.91834 0.90883 0.92589 0.94790 0.93187 0.91966 0.91858 0.90348 0.91210 0.91860 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 12.29 21.45 0.26 -54.97 16 2 C 0.01 0.52 5.35 84.65 0.45 0.97 16 3 Si 0.94 44.85 29.54 68.60 2.03 46.88 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.51 -28.16 7.35 25.60 0.19 -27.98 16 8 H 0.05 2.71 7.00 -2.91 -0.02 2.69 16 9 C 0.05 2.64 1.83 -10.47 -0.02 2.62 16 10 H 0.00 -0.28 7.85 -2.39 -0.02 -0.30 16 11 C -0.10 -4.97 5.74 31.89 0.18 -4.78 16 12 C -0.12 -4.59 6.83 31.67 0.22 -4.37 16 13 C -0.11 -3.72 6.14 31.32 0.19 -3.52 16 14 C -0.07 -3.01 1.91 -10.07 -0.02 -3.03 16 15 H 0.05 2.03 7.65 -2.39 -0.02 2.01 16 16 C -0.07 -2.63 2.06 -9.71 -0.02 -2.65 16 17 C -0.11 -4.29 5.57 31.32 0.17 -4.11 16 18 C -0.12 -3.51 6.80 31.32 0.21 -3.30 16 19 C -0.12 -2.80 6.83 31.67 0.22 -2.58 16 20 C -0.11 -3.06 5.78 31.89 0.18 -2.87 16 21 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 22 H 0.03 1.54 8.05 -2.39 -0.02 1.52 16 23 H 0.03 1.70 7.56 -2.39 -0.02 1.68 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.15 7.17 -2.39 -0.02 2.13 16 28 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 2.12 6.45 -2.39 -0.02 2.10 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.72 8.05 -2.38 -0.02 1.70 16 36 H 0.08 1.79 7.84 -2.38 -0.02 1.77 16 Total: -1.00 -60.62 274.56 5.26 -55.36 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.01 Total: 8.34 kcal Atomic # 6 Polarization: -57.58 SS G_CDS: 1.96 Total: -55.62 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.26 Total: -54.97 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -60.62 5.26 -55.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023517.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.371 kcal (2) G-P(sol) polarization free energy of solvation -60.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds