Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00364 * 2 1 4 4 H 1.48499 * 109.47011 * 264.78017 * 3 2 1 5 5 H 1.48502 * 109.46920 * 24.77845 * 3 2 1 6 6 H 1.48493 * 109.47274 * 144.77738 * 3 2 1 7 7 C 1.37879 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00322 * 5.37107 * 7 2 1 9 9 C 1.50699 * 119.99705 * 185.37466 * 7 2 1 10 10 H 1.08997 * 109.61935 * 335.58373 * 9 7 2 11 11 C 1.53272 * 109.77379 * 96.04937 * 9 7 2 12 12 C 1.53147 * 108.99206 * 169.10752 * 11 9 7 13 13 C 1.53013 * 109.46731 * 289.62685 * 12 11 9 14 14 C 1.52135 * 108.73804 * 51.17596 * 13 12 11 15 15 N 1.32516 * 124.20275 * 162.49233 * 14 13 12 16 16 C 1.28670 * 117.87940 * 180.02562 * 15 14 13 17 17 S 1.70910 * 110.14050 * 359.97438 * 16 15 14 18 18 C 1.34617 * 122.63793 * 342.51775 * 14 13 12 19 19 H 0.97006 * 120.00135 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.55123 * 288.95865 * 11 9 7 21 21 H 1.09000 * 109.55462 * 49.25791 * 11 9 7 22 22 H 1.09002 * 109.47623 * 49.61422 * 12 11 9 23 23 H 1.09007 * 109.47425 * 169.62171 * 12 11 9 24 24 H 1.09001 * 109.56846 * 291.41674 * 13 12 11 25 25 H 1.09000 * 109.61608 * 170.96410 * 13 12 11 26 26 H 1.08000 * 124.92875 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3959 2.6820 0.5868 6 1 3.4872 1.4744 0.8075 7 6 2.0044 -1.1941 0.0005 8 1 1.4680 -2.1274 -0.0866 9 6 3.5065 -1.1970 0.1228 10 1 3.9039 -0.2441 -0.2267 11 6 3.9072 -1.4163 1.5858 12 6 5.4128 -1.6878 1.6548 13 6 5.7102 -3.0661 1.0606 14 6 5.0557 -3.1591 -0.3096 15 7 5.3765 -4.0581 -1.2289 16 6 4.7437 -4.0256 -2.3488 17 16 3.5970 -2.7583 -2.3402 18 6 4.0805 -2.3205 -0.7068 19 1 -0.4850 0.8401 -0.0004 20 1 3.6704 -0.5248 2.1665 21 1 3.3637 -2.2709 1.9888 22 1 5.9461 -0.9250 1.0875 23 1 5.7395 -1.6621 2.6945 24 1 5.3049 -3.8400 1.7125 25 1 6.7877 -3.1968 0.9606 26 1 4.9127 -4.7011 -3.1743 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261205009.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = 24.062078 kcal Electronic energy + Delta-G solvation = -11701.254639 eV Core-core repulsion = 9677.809195 eV Total energy + Delta-G solvation = -2023.445444 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.38926 -35.90953 -32.78742 -30.40340 -28.76915 -25.29379 -24.03657 -21.67944 -20.60247 -17.81050 -17.39083 -16.85549 -14.65533 -14.53369 -14.21949 -13.63935 -13.33350 -13.10732 -12.60830 -11.90342 -11.59593 -11.46380 -10.98708 -10.91128 -10.45069 -10.14124 -9.99690 -9.75948 -9.31940 -8.86902 -8.73007 -8.37286 -7.85700 -6.20927 -4.22818 1.51543 2.16512 2.63311 3.19668 3.28478 3.29171 3.43787 4.29360 4.71025 5.07370 5.48145 5.52611 5.58546 5.90375 6.02629 6.17942 6.21794 6.34386 6.46283 6.50699 6.77744 6.88331 7.04153 7.23722 7.55808 8.35729 8.38650 8.83701 9.39492 10.91524 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.034296 B = 0.013979 C = 0.011189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.233561 B = 2002.575548 C = 2501.907689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.079 3.921 10 H 0.051 0.949 11 C -0.107 4.107 12 C -0.125 4.125 13 C -0.025 4.025 14 C 0.008 3.992 15 N -0.473 5.473 16 C -0.032 4.032 17 S 0.136 5.864 18 C -0.145 4.145 19 H 0.267 0.733 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 -2.729 -1.133 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.696 3.304 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.096 0.904 9 C 0.058 3.942 10 H 0.069 0.931 11 C -0.147 4.147 12 C -0.163 4.163 13 C -0.065 4.065 14 C -0.122 4.122 15 N -0.187 5.187 16 C -0.330 4.330 17 S 0.391 5.609 18 C -0.267 4.267 19 H 0.077 0.923 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.376 -2.701 -1.869 8.997 hybrid contribution 0.672 0.799 0.617 1.213 sum 9.048 -1.902 -1.253 9.331 Atomic orbital electron populations 1.69884 1.06251 1.27245 1.49312 1.25024 0.94715 0.98797 0.93935 0.86964 0.80458 0.83860 0.79129 1.19878 1.21133 1.18655 1.20876 0.87847 0.95001 1.51682 0.90436 1.18030 0.96511 0.89961 0.89714 0.93123 1.21880 0.92710 1.01609 0.98459 1.21700 0.98758 0.96002 0.99830 1.20163 0.98896 0.97964 0.89519 1.20840 0.99260 0.94598 0.97488 1.65775 1.27403 1.24355 1.01154 1.27873 1.00507 1.04790 0.99813 1.84046 1.36647 1.27025 1.13207 1.26808 0.98818 1.03924 0.97139 0.92344 0.92111 0.91834 0.92375 0.91999 0.90994 0.91261 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.96 55.43 0.77 -25.36 15 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 15 3 Si 0.87 20.47 27.01 -169.99 -4.59 15.88 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.26 -5.83 6.79 56.52 0.38 -5.45 15 7 C -0.52 -13.83 8.49 -34.44 -0.29 -14.13 15 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 15 9 C 0.08 1.81 2.13 -92.64 -0.20 1.62 15 10 H 0.05 1.18 5.25 -51.93 -0.27 0.91 15 11 C -0.11 -2.16 5.26 -26.51 -0.14 -2.30 15 12 C -0.12 -2.08 5.87 -26.65 -0.16 -2.24 15 13 C -0.03 -0.43 6.29 -27.17 -0.17 -0.60 15 14 C 0.01 0.16 6.78 -82.87 -0.56 -0.40 15 15 N -0.47 -9.20 10.51 -11.16 -0.12 -9.32 15 16 C -0.03 -0.55 12.22 51.44 0.63 0.07 15 17 S 0.14 2.62 22.78 -107.50 -2.45 0.17 15 18 C -0.15 -3.13 5.84 -35.44 -0.21 -3.33 15 19 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 20 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 21 H 0.06 1.31 8.08 -51.93 -0.42 0.90 15 22 H 0.06 0.96 8.10 -51.93 -0.42 0.54 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.19 2.42 8.06 -52.49 -0.42 2.00 15 LS Contribution 232.03 15.07 3.50 3.50 Total: -1.00 -29.38 232.03 -6.88 -36.27 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -2.80 Total: -1.88 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -1.19 Total: -19.25 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.66 Total: -34.68 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.59 Total: 15.88 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.45 Total: 0.17 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.38 -6.88 -36.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205009.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.328 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds