Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00364 * 2 1 4 4 H 1.48499 * 109.47011 * 264.78017 * 3 2 1 5 5 H 1.48502 * 109.46920 * 24.77845 * 3 2 1 6 6 H 1.48493 * 109.47274 * 144.77738 * 3 2 1 7 7 C 1.37879 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00322 * 5.37107 * 7 2 1 9 9 C 1.50699 * 119.99705 * 185.37466 * 7 2 1 10 10 H 1.08997 * 109.61935 * 335.58373 * 9 7 2 11 11 C 1.53272 * 109.77379 * 96.04937 * 9 7 2 12 12 C 1.53147 * 108.99206 * 169.10752 * 11 9 7 13 13 C 1.53013 * 109.46731 * 289.62685 * 12 11 9 14 14 C 1.52135 * 108.73804 * 51.17596 * 13 12 11 15 15 N 1.32516 * 124.20275 * 162.49233 * 14 13 12 16 16 C 1.28670 * 117.87940 * 180.02562 * 15 14 13 17 17 S 1.70910 * 110.14050 * 359.97438 * 16 15 14 18 18 C 1.34617 * 122.63793 * 342.51775 * 14 13 12 19 19 H 0.97006 * 120.00135 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.55123 * 288.95865 * 11 9 7 21 21 H 1.09000 * 109.55462 * 49.25791 * 11 9 7 22 22 H 1.09002 * 109.47623 * 49.61422 * 12 11 9 23 23 H 1.09007 * 109.47425 * 169.62171 * 12 11 9 24 24 H 1.09001 * 109.56846 * 291.41674 * 13 12 11 25 25 H 1.09000 * 109.61608 * 170.96410 * 13 12 11 26 26 H 1.08000 * 124.92875 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3959 2.6820 0.5868 6 1 3.4872 1.4744 0.8075 7 6 2.0044 -1.1941 0.0005 8 1 1.4680 -2.1274 -0.0866 9 6 3.5065 -1.1970 0.1228 10 1 3.9039 -0.2441 -0.2267 11 6 3.9072 -1.4163 1.5858 12 6 5.4128 -1.6878 1.6548 13 6 5.7102 -3.0661 1.0606 14 6 5.0557 -3.1591 -0.3096 15 7 5.3765 -4.0581 -1.2289 16 6 4.7437 -4.0256 -2.3488 17 16 3.5970 -2.7583 -2.3402 18 6 4.0805 -2.3205 -0.7068 19 1 -0.4850 0.8401 -0.0004 20 1 3.6704 -0.5248 2.1665 21 1 3.3637 -2.2709 1.9888 22 1 5.9461 -0.9250 1.0875 23 1 5.7395 -1.6621 2.6945 24 1 5.3049 -3.8400 1.7125 25 1 6.7877 -3.1968 0.9606 26 1 4.9127 -4.7011 -3.1743 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261205009.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = 5.441880 kcal Electronic energy + Delta-G solvation = -11702.062072 eV Core-core repulsion = 9677.809195 eV Total energy + Delta-G solvation = -2024.252877 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.88727 -37.48748 -34.72651 -32.11403 -30.26757 -27.13800 -25.51638 -23.30479 -22.16221 -19.49485 -18.99208 -18.65443 -16.47952 -16.05696 -15.72663 -15.20180 -14.82425 -14.74110 -14.44843 -13.38413 -13.17977 -13.08879 -12.67610 -12.61498 -12.09151 -11.87505 -11.58076 -11.45575 -11.10844 -10.76105 -10.38820 -9.95793 -9.39926 -8.32346 -6.37862 0.00659 0.67333 1.13689 1.33836 1.35183 1.45297 1.94607 2.31436 3.01957 3.35653 4.05931 4.19236 4.21318 4.44331 4.49807 4.69000 4.76361 4.84028 5.04683 5.12703 5.20949 5.39468 5.49198 5.57682 5.65735 6.25388 6.67097 6.88655 7.27306 8.84038 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.034296 B = 0.013979 C = 0.011189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.233561 B = 2002.575548 C = 2501.907689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.511 4.511 8 H 0.031 0.969 9 C 0.079 3.921 10 H 0.048 0.952 11 C -0.107 4.107 12 C -0.115 4.115 13 C -0.027 4.027 14 C 0.015 3.985 15 N -0.492 5.492 16 C 0.002 3.998 17 S 0.110 5.890 18 C -0.192 4.192 19 H 0.268 0.732 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.538 -2.846 -0.984 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.177 4.177 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.161 1.161 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.058 3.942 10 H 0.065 0.935 11 C -0.146 4.146 12 C -0.152 4.152 13 C -0.067 4.067 14 C -0.115 4.115 15 N -0.205 5.205 16 C -0.296 4.296 17 S 0.365 5.635 18 C -0.313 4.313 19 H 0.077 0.923 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.115 0.885 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 11.067 -2.824 -1.708 11.548 hybrid contribution -0.175 0.652 0.490 0.834 sum 10.892 -2.172 -1.218 11.173 Atomic orbital electron populations 1.70034 1.08179 1.28232 1.51654 1.25854 0.95400 1.02636 0.93786 0.85970 0.79941 0.79013 0.79674 1.19358 1.20987 1.16083 1.20991 0.90271 0.93084 1.50559 0.95114 1.17908 0.93574 0.90762 0.91921 0.93465 1.21781 0.95629 1.01020 0.96220 1.21637 0.95544 0.95971 1.02095 1.20335 1.00130 0.98331 0.87898 1.21385 0.98185 0.93334 0.98567 1.65909 1.28220 1.24613 1.01809 1.28649 0.97640 1.03276 1.00056 1.84098 1.37982 1.28575 1.12837 1.26642 1.01092 1.05278 0.98325 0.92317 0.92230 0.93239 0.91938 0.88547 0.90127 0.88842 0.75247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.96 21.45 0.30 -57.05 15 2 C 0.02 1.21 5.47 84.66 0.46 1.67 15 3 Si 0.93 42.25 27.01 68.60 1.85 44.11 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 6 H -0.24 -9.76 6.79 99.48 0.68 -9.09 15 7 C -0.51 -28.27 8.49 25.60 0.22 -28.05 15 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 15 9 C 0.08 3.62 2.13 -12.10 -0.03 3.60 15 10 H 0.05 2.15 5.25 -2.39 -0.01 2.14 15 11 C -0.11 -4.19 5.26 30.73 0.16 -4.03 15 12 C -0.11 -3.44 5.87 30.65 0.18 -3.26 15 13 C -0.03 -0.83 6.29 30.31 0.19 -0.64 15 14 C 0.02 0.58 6.78 42.09 0.29 0.87 15 15 N -0.49 -17.75 10.51 -189.22 -1.99 -19.74 15 16 C 0.00 0.06 12.22 130.71 1.60 1.66 15 17 S 0.11 4.18 22.78 -56.49 -1.29 2.89 15 18 C -0.19 -8.14 5.84 24.95 0.15 -8.00 15 19 H 0.27 15.25 8.31 -92.70 -0.77 14.48 15 20 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.05 2.04 8.08 -2.39 -0.02 2.02 15 22 H 0.06 1.84 8.10 -2.39 -0.02 1.83 15 23 H 0.10 2.27 8.14 -2.38 -0.02 2.25 15 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 26 H 0.23 4.99 8.06 -2.91 -0.02 4.97 15 Total: -1.00 -64.91 232.03 3.24 -61.68 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.14 Total: 4.31 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 3.22 Total: -36.19 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.69 Total: -76.79 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.85 Total: 44.11 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.29 Total: 2.89 kcal Total: -64.91 3.24 -61.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205009.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.117 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds