Wall clock time and date at job start Mon Mar 30 2020 02:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48504 * 109.47318 * 240.00124 * 3 2 1 5 5 H 1.48500 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47048 * 120.00000 * 3 2 1 7 7 C 1.37875 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99737 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00564 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.58786 * 59.69560 * 9 7 2 11 11 C 1.53025 * 109.59515 * 179.97438 * 9 7 2 12 12 C 1.53144 * 109.44828 * 170.98993 * 11 9 7 13 13 C 1.53277 * 108.99890 * 289.61976 * 12 11 9 14 14 C 1.51002 * 108.72890 * 49.18914 * 13 12 11 15 15 S 1.75881 * 126.22495 * 164.01043 * 14 13 12 16 16 C 1.70910 * 90.27349 * 180.02562 * 15 14 13 17 17 N 1.29448 * 110.15563 * 0.32998 * 16 15 14 18 18 C 1.32519 * 117.74192 * 359.55425 * 17 16 15 19 19 H 0.97003 * 119.99965 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47384 * 51.00018 * 11 9 7 21 21 H 1.08998 * 109.47635 * 290.98127 * 11 9 7 22 22 H 1.09005 * 109.54924 * 169.76455 * 12 11 9 23 23 H 1.09000 * 109.55186 * 49.47967 * 12 11 9 24 24 H 1.09002 * 109.62130 * 169.01020 * 13 12 11 25 25 H 1.08998 * 109.61963 * 289.37383 * 13 12 11 26 26 H 1.07999 * 124.93107 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6192 -2.5564 -0.8869 11 6 2.2429 -3.6644 -0.0018 12 6 1.4876 -4.9773 0.2243 13 6 0.9861 -5.0214 1.6720 14 6 0.2876 -3.7193 1.9831 15 16 -0.7891 -3.4157 3.3403 16 6 -1.0082 -1.8037 2.8165 17 7 -0.3277 -1.5893 1.7364 18 6 0.3903 -2.5916 1.2504 19 1 -0.4850 0.8401 0.0004 20 1 2.9715 -3.5223 0.7963 21 1 2.7580 -3.7022 -0.9617 22 1 2.1568 -5.8188 0.0443 23 1 0.6390 -5.0320 -0.4576 24 1 0.2874 -5.8494 1.7923 25 1 1.8307 -5.1542 2.3481 26 1 -1.6287 -1.0715 3.3117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261207747.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:43 Heat of formation + Delta-G solvation = 43.816289 kcal Electronic energy + Delta-G solvation = -11888.979316 eV Core-core repulsion = 9866.390478 eV Total energy + Delta-G solvation = -2022.588837 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.88060 -35.37094 -32.79402 -29.73801 -28.38237 -24.88139 -23.55833 -21.64683 -20.50505 -17.41244 -17.09997 -16.02329 -14.55403 -14.20785 -13.91408 -13.52547 -12.94400 -12.80744 -12.28499 -11.64421 -11.18218 -11.14534 -11.05557 -10.80245 -10.46045 -10.21396 -9.68709 -9.42237 -9.15050 -8.41207 -8.14529 -7.84365 -7.43016 -5.80783 -3.89583 1.81607 2.43394 2.79159 3.38511 3.42439 3.45096 4.21797 4.54981 5.31932 5.46625 5.58718 5.60525 5.66055 6.12865 6.20443 6.25004 6.37647 6.45261 6.67579 6.80986 6.96475 7.15987 7.52647 7.69801 8.03605 8.37503 8.99834 9.25746 9.70922 11.19913 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.034833 B = 0.014242 C = 0.010826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.644750 B = 1965.525909 C = 2585.826037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.076 3.924 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.116 3.884 10 H 0.043 0.957 11 C -0.108 4.108 12 C -0.116 4.116 13 C -0.026 4.026 14 C -0.262 4.262 15 S -0.017 6.017 16 C 0.000 4.000 17 N -0.360 5.360 18 C 0.131 3.869 19 H 0.256 0.744 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -7.111 3.746 8.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.074 0.926 9 C 0.095 3.905 10 H 0.061 0.939 11 C -0.146 4.146 12 C -0.155 4.155 13 C -0.066 4.066 14 C -0.381 4.381 15 S 0.235 5.765 16 C -0.301 4.301 17 N -0.069 5.069 18 C 0.000 4.000 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.179 -6.975 4.360 8.309 hybrid contribution 0.720 1.213 -0.343 1.451 sum -0.459 -5.762 4.017 7.039 Atomic orbital electron populations 1.70060 1.05467 1.25744 1.44282 1.24914 0.94675 0.98630 0.95001 0.86802 0.79726 0.83826 0.78366 1.20401 1.21427 1.20608 1.20775 0.92464 0.89615 1.54800 0.92569 1.17732 0.90795 0.93474 0.88513 0.93890 1.21631 0.98504 0.93675 1.00817 1.21657 0.99994 0.98565 0.95297 1.19933 0.97791 0.91571 0.97303 1.26065 1.09430 1.01760 1.00880 1.83279 1.46047 1.15944 1.31226 1.28910 1.06190 0.96903 0.98068 1.66873 1.04024 1.30414 1.05611 1.22401 0.94277 0.84508 0.98841 0.93357 0.92721 0.92317 0.92418 0.92059 0.92029 0.91649 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.74 10.39 55.43 0.58 -23.16 15 2 C 0.08 2.13 5.03 -17.82 -0.09 2.04 15 3 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 7 C -0.54 -14.96 8.54 -34.44 -0.29 -15.26 15 8 H 0.06 1.54 7.75 -52.48 -0.41 1.13 15 9 C 0.12 2.92 2.45 -92.20 -0.23 2.70 15 10 H 0.04 1.17 8.14 -51.93 -0.42 0.75 15 11 C -0.11 -2.21 5.12 -26.64 -0.14 -2.34 15 12 C -0.12 -1.98 5.95 -26.51 -0.16 -2.13 15 13 C -0.03 -0.45 6.27 -27.59 -0.17 -0.62 15 14 C -0.26 -5.54 6.40 -35.35 -0.23 -5.77 15 15 S -0.02 -0.31 23.21 -107.50 -2.50 -2.81 15 16 C 0.00 0.00 12.25 51.76 0.63 0.63 15 17 N -0.36 -9.24 7.09 -10.95 -0.08 -9.32 15 18 C 0.13 3.26 6.13 -82.78 -0.51 2.76 15 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 20 H 0.05 1.13 8.08 -51.93 -0.42 0.71 15 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 1.06 8.11 -51.93 -0.42 0.63 15 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.18 3.17 8.06 -52.49 -0.42 2.74 15 LS Contribution 230.69 15.07 3.48 3.48 Total: -1.00 -29.92 230.69 -7.64 -37.55 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -2.92 Total: -4.40 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.18 Total: -18.00 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.50 Total: -32.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.50 Total: -2.81 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.92 -7.64 -37.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207747.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.370 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds