Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39490 * 125.87434 * 2 1 4 4 C 1.27486 * 114.33956 * 174.67810 * 3 2 1 5 5 C 1.50453 * 108.61419 * 359.10119 * 4 3 2 6 6 H 1.09001 * 105.13117 * 255.32538 * 5 4 3 7 7 C 1.48717 * 114.68620 * 140.39435 * 5 4 3 8 8 C 1.51080 * 115.69542 * 262.48779 * 7 5 4 9 9 H 1.08998 * 109.00633 * 194.20175 * 8 7 5 10 10 C 1.50705 * 109.00074 * 75.35390 * 8 7 5 11 11 H 1.07996 * 120.00090 * 0.02562 * 10 8 7 12 12 C 1.37882 * 120.00032 * 179.97438 * 10 8 7 13 13 N 1.31508 * 119.99952 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 120.00006 * 0.02562 * 12 10 8 15 15 H 1.48495 * 109.47364 * 89.99378 * 14 12 10 16 16 H 1.48502 * 109.47219 * 209.99926 * 14 12 10 17 17 H 1.48506 * 109.46930 * 329.99718 * 14 12 10 18 18 C 1.51462 * 111.86320 * 314.74387 * 8 7 5 19 19 C 1.50718 * 112.39315 * 55.81954 * 18 8 7 20 20 C 1.48506 * 125.87108 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.92879 * 305.53877 * 20 2 1 22 22 H 1.09004 * 109.46649 * 270.02408 * 1 2 3 23 23 H 1.08996 * 109.47360 * 30.02001 * 1 2 3 24 24 H 1.08997 * 109.47309 * 150.02878 * 1 2 3 25 25 H 1.08003 * 125.69333 * 179.10097 * 4 3 2 26 26 H 1.08994 * 108.24137 * 24.10171 * 7 5 4 27 27 H 1.08994 * 108.23902 * 141.07848 * 7 5 4 28 28 H 0.97005 * 120.00067 * 179.97438 * 13 12 10 29 29 H 1.09005 * 108.89818 * 176.56782 * 18 8 7 30 30 H 1.09004 * 108.89615 * 295.16271 * 18 8 7 31 31 H 1.08997 * 108.34451 * 188.25823 * 19 18 8 32 32 H 1.08994 * 108.34491 * 71.21138 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2824 1.1303 0.0000 4 6 3.5275 0.8783 0.1077 5 6 3.7077 -0.6108 0.2251 6 1 3.9324 -0.7882 1.2768 7 6 4.8750 -1.1556 -0.5181 8 6 4.5712 -1.7394 -1.8780 9 1 5.4284 -2.3235 -2.2131 10 6 4.3331 -0.6148 -2.8526 11 1 4.3961 0.4106 -2.5198 12 6 4.0357 -0.8952 -4.1695 13 7 3.8274 0.0861 -5.0198 14 14 3.9274 -2.6689 -4.7454 15 1 2.5340 -3.1569 -4.5859 16 1 4.3197 -2.7499 -6.1754 17 1 4.8425 -3.5100 -3.9326 18 6 3.3487 -2.6331 -1.8480 19 6 2.1321 -1.9239 -1.3110 20 6 2.3352 -1.2034 0.0005 21 1 2.0703 -1.8531 0.8346 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5134 25 1 4.3206 1.6114 0.1138 26 1 5.6025 -0.3542 -0.6457 27 1 5.3328 -1.9356 0.0902 28 1 3.6186 -0.1111 -5.9464 29 1 3.1383 -2.9777 -2.8605 30 1 3.5587 -3.4974 -1.2178 31 1 1.3372 -2.6580 -1.1795 32 1 1.8026 -1.1976 -2.0540 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211728.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = 65.401855 kcal Electronic energy + Delta-G solvation = -14505.988109 eV Core-core repulsion = 12275.134177 eV Total energy + Delta-G solvation = -2230.853931 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.91561 -35.90060 -32.76728 -32.13297 -29.79333 -29.66019 -25.66421 -24.38053 -22.42695 -21.03112 -19.70857 -18.02788 -16.15534 -15.67844 -15.28476 -14.70328 -14.36067 -13.74995 -13.21698 -12.67702 -12.52298 -12.42110 -12.31849 -11.67363 -11.51241 -11.27887 -10.88141 -10.76854 -10.45100 -9.90993 -9.81931 -9.50356 -9.24064 -9.03359 -8.73934 -8.45549 -7.00974 -5.98387 -3.95049 3.08560 3.28235 3.38900 3.41196 3.44217 4.45851 4.97843 5.21933 5.32377 5.39107 5.47940 5.79359 5.84754 5.91301 5.97587 6.01231 6.09347 6.22764 6.34648 6.46685 6.54293 6.66031 6.73101 7.03285 7.11544 7.23295 7.33924 7.50131 7.86040 7.90820 8.61655 8.79994 9.08001 9.64474 11.15124 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.035208 B = 0.013122 C = 0.012837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.084760 B = 2133.329887 C = 2180.713842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.152 3.848 2 N -0.562 5.562 3 N -0.239 5.239 4 C 0.039 3.961 5 C -0.073 4.073 6 H 0.057 0.943 7 C -0.074 4.074 8 C 0.007 3.993 9 H 0.029 0.971 10 C -0.498 4.498 11 H 0.075 0.925 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.885 3.115 15 H -0.283 1.283 16 H -0.301 1.301 17 H -0.268 1.268 18 C -0.106 4.106 19 C -0.111 4.111 20 C 0.149 3.851 21 H 0.061 0.939 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.183 0.817 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.261 0.739 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -3.694 10.103 11.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.381 5.381 3 N -0.041 5.041 4 C -0.177 4.177 5 C -0.095 4.095 6 H 0.075 0.925 7 C -0.113 4.113 8 C -0.012 4.012 9 H 0.047 0.953 10 C -0.536 4.536 11 H 0.093 0.907 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.717 3.283 15 H -0.210 1.210 16 H -0.229 1.229 17 H -0.193 1.193 18 C -0.143 4.143 19 C -0.149 4.149 20 C 0.044 3.956 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.200 0.800 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.548 -2.971 9.855 10.887 hybrid contribution 0.248 -1.704 -0.552 1.809 sum -3.300 -4.675 9.302 10.922 Atomic orbital electron populations 1.20955 0.76709 1.01970 0.99427 1.51280 1.03102 0.99399 1.84314 1.73661 1.05268 1.15567 1.09632 1.26240 0.93649 0.95712 1.02139 1.19953 0.95489 0.93927 1.00083 0.92453 1.19975 0.95336 0.99427 0.96520 1.18516 0.93299 0.95663 0.93678 0.95274 1.21070 1.46800 0.93347 0.92375 0.90655 1.25025 0.95110 0.96366 0.96916 1.69904 1.48966 1.31212 1.04096 0.86893 0.78091 0.86608 0.76702 1.21045 1.22913 1.19312 1.20999 0.97187 0.97585 0.98561 1.20837 0.97766 0.99294 0.97046 1.20998 0.89510 0.88034 0.97034 0.92103 0.94871 0.91792 0.92013 0.80022 0.91506 0.94454 0.92960 0.93570 0.95012 0.94400 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 2.33 11.44 59.85 0.68 3.01 16 2 N -0.56 -10.74 3.82 -115.21 -0.44 -11.18 16 3 N -0.24 -4.87 12.01 32.28 0.39 -4.48 16 4 C 0.04 0.72 11.22 -14.20 -0.16 0.56 16 5 C -0.07 -1.32 2.46 -94.91 -0.23 -1.56 16 6 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 7 C -0.07 -1.40 4.75 -29.79 -0.14 -1.54 16 8 C 0.01 0.16 2.06 -93.51 -0.19 -0.03 16 9 H 0.03 0.68 7.26 -51.93 -0.38 0.30 16 10 C -0.50 -13.63 8.19 -34.44 -0.28 -13.91 16 11 H 0.08 2.25 7.55 -52.49 -0.40 1.86 16 12 C 0.07 1.91 5.44 -17.82 -0.10 1.81 16 13 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 14 Si 0.89 22.24 24.32 -169.99 -4.13 18.11 16 15 H -0.28 -6.99 6.86 56.52 0.39 -6.60 16 16 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 17 H -0.27 -6.39 6.51 56.52 0.37 -6.02 16 18 C -0.11 -2.28 4.75 -28.65 -0.14 -2.41 16 19 C -0.11 -2.26 4.78 -28.87 -0.14 -2.40 16 20 C 0.15 2.76 3.76 -68.74 -0.26 2.50 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 25 H 0.18 2.85 8.06 -52.48 -0.42 2.43 16 26 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 29 H 0.05 1.08 2.76 -51.93 -0.14 0.94 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.88 7.51 -51.93 -0.39 1.49 16 LS Contribution 247.33 15.07 3.73 3.73 Total: -1.00 -31.63 247.33 -5.31 -36.94 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.67 Total: -1.99 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.95 Total: -13.96 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.72 Total: -42.83 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.13 Total: 18.11 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.63 -5.31 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211728.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.343 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds