Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39490 * 125.87434 * 2 1 4 4 C 1.27486 * 114.33956 * 174.67810 * 3 2 1 5 5 C 1.50453 * 108.61419 * 359.10119 * 4 3 2 6 6 H 1.09001 * 105.13117 * 255.32538 * 5 4 3 7 7 C 1.48717 * 114.68620 * 140.39435 * 5 4 3 8 8 C 1.51080 * 115.69542 * 262.48779 * 7 5 4 9 9 H 1.08998 * 109.00633 * 194.20175 * 8 7 5 10 10 C 1.50705 * 109.00074 * 75.35390 * 8 7 5 11 11 H 1.07996 * 120.00090 * 0.02562 * 10 8 7 12 12 C 1.37882 * 120.00032 * 179.97438 * 10 8 7 13 13 N 1.31508 * 119.99952 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 120.00006 * 0.02562 * 12 10 8 15 15 H 1.48495 * 109.47364 * 89.99378 * 14 12 10 16 16 H 1.48502 * 109.47219 * 209.99926 * 14 12 10 17 17 H 1.48506 * 109.46930 * 329.99718 * 14 12 10 18 18 C 1.51462 * 111.86320 * 314.74387 * 8 7 5 19 19 C 1.50718 * 112.39315 * 55.81954 * 18 8 7 20 20 C 1.48506 * 125.87108 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.92879 * 305.53877 * 20 2 1 22 22 H 1.09004 * 109.46649 * 270.02408 * 1 2 3 23 23 H 1.08996 * 109.47360 * 30.02001 * 1 2 3 24 24 H 1.08997 * 109.47309 * 150.02878 * 1 2 3 25 25 H 1.08003 * 125.69333 * 179.10097 * 4 3 2 26 26 H 1.08994 * 108.24137 * 24.10171 * 7 5 4 27 27 H 1.08994 * 108.23902 * 141.07848 * 7 5 4 28 28 H 0.97005 * 120.00067 * 179.97438 * 13 12 10 29 29 H 1.09005 * 108.89818 * 176.56782 * 18 8 7 30 30 H 1.09004 * 108.89615 * 295.16271 * 18 8 7 31 31 H 1.08997 * 108.34451 * 188.25823 * 19 18 8 32 32 H 1.08994 * 108.34491 * 71.21138 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2824 1.1303 0.0000 4 6 3.5275 0.8783 0.1077 5 6 3.7077 -0.6108 0.2251 6 1 3.9324 -0.7882 1.2768 7 6 4.8750 -1.1556 -0.5181 8 6 4.5712 -1.7394 -1.8780 9 1 5.4284 -2.3235 -2.2131 10 6 4.3331 -0.6148 -2.8526 11 1 4.3961 0.4106 -2.5198 12 6 4.0357 -0.8952 -4.1695 13 7 3.8274 0.0861 -5.0198 14 14 3.9274 -2.6689 -4.7454 15 1 2.5340 -3.1569 -4.5859 16 1 4.3197 -2.7499 -6.1754 17 1 4.8425 -3.5100 -3.9326 18 6 3.3487 -2.6331 -1.8480 19 6 2.1321 -1.9239 -1.3110 20 6 2.3352 -1.2034 0.0005 21 1 2.0703 -1.8531 0.8346 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5134 25 1 4.3206 1.6114 0.1138 26 1 5.6025 -0.3542 -0.6457 27 1 5.3328 -1.9356 0.0902 28 1 3.6186 -0.1111 -5.9464 29 1 3.1383 -2.9777 -2.8605 30 1 3.5587 -3.4974 -1.2178 31 1 1.3372 -2.6580 -1.1795 32 1 1.8026 -1.1976 -2.0540 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211728.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = 43.778062 kcal Electronic energy + Delta-G solvation = -14506.925787 eV Core-core repulsion = 12275.134177 eV Total energy + Delta-G solvation = -2231.791609 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.37419 -37.55716 -34.23619 -34.13880 -31.31985 -31.25595 -27.25472 -26.12795 -23.99298 -22.67518 -21.13430 -19.76942 -18.07485 -17.15233 -16.97756 -16.38984 -15.88769 -15.21122 -14.82543 -14.64003 -14.17114 -13.88651 -13.76314 -13.18206 -13.07593 -12.81313 -12.62310 -12.28386 -12.15931 -11.83476 -11.52901 -11.12892 -10.94831 -10.75725 -10.59433 -10.42064 -8.40652 -8.19655 -6.19159 1.29020 1.34654 1.44718 1.66565 2.12868 2.36461 3.16864 3.60096 3.82619 3.95649 4.11310 4.31214 4.46141 4.53178 4.59624 4.62943 4.73494 4.83025 4.86714 4.99920 5.06135 5.09654 5.20400 5.41465 5.45502 5.65968 5.75893 5.82380 5.88829 6.44244 6.58001 6.88263 7.39205 7.43907 8.97146 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.035208 B = 0.013122 C = 0.012837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.084760 B = 2133.329887 C = 2180.713842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.575 5.575 3 N -0.277 5.277 4 C 0.033 3.967 5 C -0.081 4.081 6 H 0.092 0.908 7 C -0.073 4.073 8 C 0.002 3.998 9 H 0.030 0.970 10 C -0.484 4.484 11 H 0.035 0.965 12 C 0.002 3.998 13 N -0.959 5.959 14 Si 0.946 3.054 15 H -0.278 1.278 16 H -0.310 1.310 17 H -0.241 1.241 18 C -0.109 4.109 19 C -0.105 4.105 20 C 0.145 3.855 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.199 0.801 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.258 0.742 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -6.062 12.286 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.394 5.394 3 N -0.079 5.079 4 C -0.183 4.183 5 C -0.102 4.102 6 H 0.110 0.890 7 C -0.111 4.111 8 C -0.016 4.016 9 H 0.048 0.952 10 C -0.522 4.522 11 H 0.054 0.946 12 C -0.192 4.192 13 N -0.601 5.601 14 Si 0.776 3.224 15 H -0.206 1.206 16 H -0.239 1.239 17 H -0.164 1.164 18 C -0.147 4.147 19 C -0.144 4.144 20 C 0.040 3.960 21 H 0.111 0.889 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.216 0.784 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.384 -5.353 12.072 13.632 hybrid contribution 0.206 -0.879 -1.201 1.502 sum -3.178 -6.232 10.871 12.927 Atomic orbital electron populations 1.21165 0.75251 1.02123 1.01054 1.51559 1.04152 0.99159 1.84560 1.73624 1.06275 1.17008 1.10987 1.26733 0.93659 0.97009 1.00852 1.20042 0.95115 0.93112 1.01908 0.89022 1.19936 0.95893 1.00342 0.94937 1.18589 0.94060 0.94330 0.94649 0.95211 1.21385 1.44315 0.93309 0.93195 0.94644 1.25859 0.95492 1.00511 0.97385 1.70080 1.51852 1.33760 1.04422 0.85886 0.78752 0.81955 0.75843 1.20562 1.23898 1.16424 1.20971 0.96665 0.98662 0.98383 1.20804 0.98050 0.98724 0.96805 1.21151 0.89806 0.88202 0.96799 0.88864 0.92314 0.92682 0.90913 0.78426 0.92031 0.90668 0.93349 0.95528 0.91047 0.91864 0.95446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 4.24 11.44 127.77 1.46 5.70 16 2 N -0.58 -21.05 3.82 -518.43 -1.98 -23.03 16 3 N -0.28 -11.11 12.01 -50.95 -0.61 -11.72 16 4 C 0.03 1.20 11.22 88.66 0.99 2.19 16 5 C -0.08 -2.66 2.46 -13.57 -0.03 -2.69 16 6 H 0.09 2.45 8.00 -2.39 -0.02 2.43 16 7 C -0.07 -2.51 4.75 28.61 0.14 -2.37 16 8 C 0.00 0.11 2.06 -12.67 -0.03 0.08 16 9 H 0.03 1.29 7.26 -2.39 -0.02 1.28 16 10 C -0.48 -26.73 8.19 25.60 0.21 -26.52 16 11 H 0.04 2.19 7.55 -2.91 -0.02 2.17 16 12 C 0.00 0.14 5.44 84.66 0.46 0.60 16 13 N -0.96 -61.72 13.96 21.45 0.30 -61.42 16 14 Si 0.95 45.95 24.32 68.60 1.67 47.62 16 15 H -0.28 -13.17 6.86 99.48 0.68 -12.48 16 16 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 17 H -0.24 -10.49 6.51 99.48 0.65 -9.84 16 18 C -0.11 -4.34 4.75 29.35 0.14 -4.20 16 19 C -0.10 -4.02 4.78 29.21 0.14 -3.88 16 20 C 0.14 4.91 3.76 43.36 0.16 5.07 16 21 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.91 7.93 -2.39 -0.02 1.89 16 25 H 0.20 6.08 8.06 -2.91 -0.02 6.05 16 26 H 0.06 2.17 7.68 -2.39 -0.02 2.16 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 29 H 0.03 1.17 2.76 -2.38 -0.01 1.16 16 30 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.31 7.51 -2.39 -0.02 1.29 16 Total: -1.00 -70.16 247.33 4.03 -66.13 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.01 Total: 8.44 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 3.64 Total: -26.02 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -2.29 Total: -96.16 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -70.16 4.03 -66.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211728.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.909 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds