Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35042 * 126.39835 * 299.69404 * 4 2 1 6 6 N 1.30496 * 108.70029 * 179.82156 * 5 4 2 7 7 C 1.34123 * 109.25487 * 0.44166 * 6 5 4 8 8 C 1.34668 * 108.02285 * 359.72533 * 7 6 5 9 9 C 1.50700 * 126.59233 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47470 * 154.95628 * 9 8 7 11 11 C 1.53002 * 109.46950 * 274.95942 * 9 8 7 12 12 C 1.50698 * 109.47155 * 34.95540 * 9 8 7 13 13 H 1.08004 * 120.00179 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00100 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99811 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00170 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47124 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47335 * 120.00071 * 16 14 12 19 19 H 1.48499 * 109.47356 * 239.99977 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 27 27 H 1.08006 * 125.64554 * 359.96786 * 5 4 2 28 28 H 1.08006 * 125.98760 * 179.72471 * 7 6 5 29 29 H 1.08990 * 109.47395 * 59.99870 * 11 9 8 30 30 H 1.09001 * 109.47266 * 180.02562 * 11 9 8 31 31 H 1.09002 * 109.46836 * 299.99628 * 11 9 8 32 32 H 0.97002 * 119.99819 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7779 -0.3404 2.4780 6 7 2.3745 -1.1944 3.2640 7 6 3.0187 -2.1053 2.5196 8 6 2.8085 -1.8080 1.2231 9 6 3.3404 -2.5611 0.0311 10 1 2.6884 -2.3923 -0.8260 11 6 4.7511 -2.0673 -0.2961 12 6 3.3844 -4.0341 0.3463 13 1 3.0593 -4.3895 1.3130 14 6 3.8398 -4.9282 -0.5994 15 7 4.2352 -4.4955 -1.7767 16 14 3.8936 -6.7541 -0.2090 17 1 3.3968 -6.9799 1.1721 18 1 3.0348 -7.4915 -1.1703 19 1 5.2916 -7.2428 -0.3187 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.1874 0.5049 2.7994 28 1 3.6035 -2.9324 2.8944 29 1 5.4031 -2.2361 0.5608 30 1 5.1357 -2.6117 -1.1586 31 1 4.7193 -1.0019 -0.5241 32 1 4.5559 -5.1245 -2.4419 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214171.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = 42.937409 kcal Electronic energy + Delta-G solvation = -13940.385544 eV Core-core repulsion = 11708.557481 eV Total energy + Delta-G solvation = -2231.828063 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.33226 -35.56293 -34.40628 -31.16872 -29.95855 -27.26622 -27.19491 -25.13914 -22.56361 -21.82760 -20.07010 -18.40296 -16.42190 -16.00266 -14.70764 -14.59552 -14.55095 -13.65571 -13.02245 -12.84076 -12.76775 -12.44070 -12.23230 -11.67555 -11.53102 -11.28363 -11.04911 -10.94013 -10.84355 -10.49053 -10.18770 -9.89334 -9.25054 -8.89675 -8.74486 -8.40777 -7.29854 -6.06067 -4.10981 2.96274 3.28933 3.36927 3.41187 3.47450 4.06130 4.41959 4.80008 5.08579 5.20741 5.28116 5.29780 5.53034 5.59771 5.72563 5.82750 5.98500 6.07664 6.22055 6.44183 6.66785 6.82206 6.89852 7.12367 7.17046 7.64814 7.69363 7.84991 7.99421 8.09563 8.34892 8.90970 8.94656 9.54117 11.00843 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.037927 B = 0.009860 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.073728 B = 2838.938943 C = 3103.379541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 C -0.158 4.158 4 N -0.458 5.458 5 C 0.141 3.859 6 N -0.501 5.501 7 C -0.048 4.048 8 C 0.037 3.963 9 C 0.110 3.890 10 H 0.030 0.970 11 C -0.129 4.129 12 C -0.503 4.503 13 H 0.064 0.936 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.283 1.283 20 H 0.059 0.941 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.187 0.813 28 H 0.163 0.837 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.004 0.996 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 9.079 0.641 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.216 4.216 4 N -0.143 5.143 5 C -0.140 4.140 6 N -0.220 5.220 7 C -0.193 4.193 8 C -0.078 4.078 9 C 0.090 3.910 10 H 0.048 0.952 11 C -0.187 4.187 12 C -0.542 4.542 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.078 0.922 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.122 0.878 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.203 0.797 28 H 0.180 0.820 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.023 0.977 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.840 9.101 1.234 10.382 hybrid contribution 0.010 -0.950 -0.743 1.206 sum -4.831 8.151 0.491 9.488 Atomic orbital electron populations 1.22132 0.93946 1.03162 1.02409 1.21328 0.94852 0.93521 0.88131 1.22132 1.02230 0.94743 1.02479 1.45530 1.39193 1.22779 1.06798 1.24348 1.06820 1.02930 0.79858 1.70137 1.12573 1.05261 1.34033 1.21897 1.06443 1.01542 0.89438 1.22387 0.96577 0.88915 0.99873 1.17353 0.92751 0.93073 0.87835 0.95237 1.21763 0.98383 0.96069 1.02476 1.21145 1.42666 0.89918 1.00471 0.91816 1.24943 0.95109 0.99031 0.94934 1.69888 1.43783 1.34364 1.05136 0.86465 0.77658 0.84966 0.78572 1.19562 1.21096 1.20959 0.92157 0.91637 0.91045 0.87838 0.92127 0.91812 0.91020 0.79658 0.81954 0.94909 0.89348 0.97706 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.25 37.16 0.34 -1.61 16 2 C 0.13 1.87 3.55 -67.93 -0.24 1.62 16 3 C -0.16 -1.88 9.24 37.16 0.34 -1.54 16 4 N -0.46 -8.59 2.62 -106.92 -0.28 -8.87 16 5 C 0.14 2.58 11.55 -90.38 -1.04 1.53 16 6 N -0.50 -10.81 11.25 -14.66 -0.16 -10.97 16 7 C -0.05 -1.10 10.79 -17.82 -0.19 -1.29 16 8 C 0.04 0.83 5.87 -81.60 -0.48 0.35 16 9 C 0.11 2.71 2.43 -92.92 -0.23 2.49 16 10 H 0.03 0.77 7.01 -51.93 -0.36 0.41 16 11 C -0.13 -3.09 8.95 37.16 0.33 -2.75 16 12 C -0.50 -13.62 8.26 -34.44 -0.28 -13.90 16 13 H 0.06 1.74 6.85 -52.48 -0.36 1.38 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 16 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.10 1.71 6.72 -51.93 -0.35 1.36 16 24 H 0.06 0.65 7.94 -51.93 -0.41 0.24 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.19 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.16 3.72 7.67 -52.48 -0.40 3.32 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -29.67 266.66 -7.07 -36.74 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.71 Total: 0.66 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.54 Total: -13.54 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.18 Total: -43.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.67 -7.07 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214171.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.682 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds