Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35042 * 126.39835 * 299.69404 * 4 2 1 6 6 N 1.30496 * 108.70029 * 179.82156 * 5 4 2 7 7 C 1.34123 * 109.25487 * 0.44166 * 6 5 4 8 8 C 1.34668 * 108.02285 * 359.72533 * 7 6 5 9 9 C 1.50700 * 126.59233 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47470 * 154.95628 * 9 8 7 11 11 C 1.53002 * 109.46950 * 274.95942 * 9 8 7 12 12 C 1.50698 * 109.47155 * 34.95540 * 9 8 7 13 13 H 1.08004 * 120.00179 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00100 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99811 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00170 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47124 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47335 * 120.00071 * 16 14 12 19 19 H 1.48499 * 109.47356 * 239.99977 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 27 27 H 1.08006 * 125.64554 * 359.96786 * 5 4 2 28 28 H 1.08006 * 125.98760 * 179.72471 * 7 6 5 29 29 H 1.08990 * 109.47395 * 59.99870 * 11 9 8 30 30 H 1.09001 * 109.47266 * 180.02562 * 11 9 8 31 31 H 1.09002 * 109.46836 * 299.99628 * 11 9 8 32 32 H 0.97002 * 119.99819 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7779 -0.3404 2.4780 6 7 2.3745 -1.1944 3.2640 7 6 3.0187 -2.1053 2.5196 8 6 2.8085 -1.8080 1.2231 9 6 3.3404 -2.5611 0.0311 10 1 2.6884 -2.3923 -0.8260 11 6 4.7511 -2.0673 -0.2961 12 6 3.3844 -4.0341 0.3463 13 1 3.0593 -4.3895 1.3130 14 6 3.8398 -4.9282 -0.5994 15 7 4.2352 -4.4955 -1.7767 16 14 3.8936 -6.7541 -0.2090 17 1 3.3968 -6.9799 1.1721 18 1 3.0348 -7.4915 -1.1703 19 1 5.2916 -7.2428 -0.3187 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.1874 0.5049 2.7994 28 1 3.6035 -2.9324 2.8944 29 1 5.4031 -2.2361 0.5608 30 1 5.1357 -2.6117 -1.1586 31 1 4.7193 -1.0019 -0.5241 32 1 4.5559 -5.1245 -2.4419 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214171.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = 26.883020 kcal Electronic energy + Delta-G solvation = -13941.081714 eV Core-core repulsion = 11708.557481 eV Total energy + Delta-G solvation = -2232.524233 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.90141 -36.80959 -36.38544 -33.12096 -31.41172 -28.96154 -28.17539 -27.21179 -23.96939 -23.59952 -21.67460 -19.95107 -18.18376 -17.76648 -16.50771 -16.13889 -15.91497 -15.00582 -14.73232 -14.52414 -14.15476 -13.94592 -13.48505 -13.10425 -12.93518 -12.89142 -12.80289 -12.41451 -12.35095 -12.27169 -12.11687 -11.71648 -11.10722 -10.72027 -10.46539 -10.28043 -9.00470 -8.13947 -6.25504 1.37388 1.40835 1.43969 1.55224 2.05078 2.38136 2.45256 3.15814 3.70086 3.94985 4.02649 4.05631 4.20405 4.62000 4.68716 4.70765 4.75091 4.82444 4.91668 4.97765 5.06963 5.13665 5.19825 5.26073 5.44448 5.60888 5.84887 5.93376 6.05007 6.32393 6.61158 6.80617 7.31738 7.43198 8.92177 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.037927 B = 0.009860 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.073728 B = 2838.938943 C = 3103.379541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.115 3.885 3 C -0.150 4.150 4 N -0.455 5.455 5 C 0.167 3.833 6 N -0.531 5.531 7 C -0.064 4.064 8 C 0.013 3.987 9 C 0.116 3.884 10 H 0.009 0.991 11 C -0.116 4.116 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.955 3.045 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.278 1.278 20 H 0.080 0.920 21 H 0.040 0.960 22 H 0.101 0.899 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.100 0.900 27 H 0.236 0.764 28 H 0.149 0.851 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 10.554 0.862 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 C -0.207 4.207 4 N -0.139 5.139 5 C -0.114 4.114 6 N -0.250 5.250 7 C -0.209 4.209 8 C -0.103 4.103 9 C 0.096 3.904 10 H 0.027 0.973 11 C -0.174 4.174 12 C -0.560 4.560 13 H 0.071 0.929 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.203 1.203 20 H 0.099 0.901 21 H 0.059 0.941 22 H 0.119 0.881 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.252 0.748 28 H 0.166 0.834 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.042 10.586 1.434 12.273 hybrid contribution 0.331 -1.323 -0.819 1.591 sum -5.710 9.263 0.615 10.899 Atomic orbital electron populations 1.22113 0.91535 1.02326 1.04922 1.21687 0.96737 0.94655 0.85659 1.22107 1.01043 0.92638 1.04933 1.45744 1.38071 1.21687 1.08360 1.25262 1.04575 1.02486 0.79101 1.70121 1.14000 1.06103 1.34786 1.21815 1.07124 1.01989 0.89986 1.21956 0.98715 0.90893 0.98723 1.17114 0.92689 0.92546 0.88071 0.97317 1.21579 0.97873 0.96853 1.01102 1.21373 1.42939 0.91562 1.00146 0.92906 1.25641 0.94749 1.02873 0.94815 1.69985 1.44094 1.35626 1.05731 0.85541 0.77834 0.80281 0.78255 1.19601 1.20484 1.20319 0.90106 0.94110 0.88080 0.90315 0.90133 0.93639 0.88112 0.74758 0.83389 0.95563 0.91461 0.95842 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.25 71.98 0.67 -2.60 16 2 C 0.11 3.19 3.55 44.99 0.16 3.35 16 3 C -0.15 -3.05 9.24 71.98 0.67 -2.39 16 4 N -0.45 -16.44 2.62 -492.18 -1.29 -17.73 16 5 C 0.17 5.67 11.55 180.26 2.08 7.75 16 6 N -0.53 -22.35 11.25 -200.31 -2.25 -24.61 16 7 C -0.06 -2.98 10.79 83.52 0.90 -2.07 16 8 C 0.01 0.58 5.87 40.95 0.24 0.82 16 9 C 0.12 5.89 2.43 -12.29 -0.03 5.86 16 10 H 0.01 0.48 7.01 -2.39 -0.02 0.46 16 11 C -0.12 -5.69 8.95 71.98 0.64 -5.04 16 12 C -0.52 -29.02 8.26 25.60 0.21 -28.80 16 13 H 0.05 2.98 6.85 -2.91 -0.02 2.96 16 14 C 0.02 1.00 5.30 84.65 0.45 1.45 16 15 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 16 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H 0.08 1.42 7.95 -2.39 -0.02 1.40 16 21 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.08 2.58 6.72 -2.39 -0.02 2.57 16 24 H 0.08 1.34 7.94 -2.39 -0.02 1.32 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.24 5.36 8.06 -2.91 -0.02 5.34 16 28 H 0.15 7.11 7.67 -2.91 -0.02 7.09 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -65.04 266.66 5.80 -59.24 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.08 Total: 10.29 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 5.99 Total: -21.69 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -3.30 Total: -93.68 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -65.04 5.80 -59.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214171.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.123 kcal (2) G-P(sol) polarization free energy of solvation -65.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds