Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46729 * 2 1 4 4 N 1.40085 * 126.04140 * 269.97361 * 3 2 1 5 5 C 1.30834 * 108.20608 * 179.74242 * 4 3 2 6 6 C 1.39868 * 108.20333 * 0.43874 * 5 4 3 7 7 C 1.50706 * 126.04052 * 179.81596 * 6 5 4 8 8 C 1.52999 * 109.46953 * 264.69492 * 7 6 5 9 9 C 1.50706 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72054 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 C 1.34952 * 126.03379 * 90.00397 * 3 2 1 18 18 C 1.50696 * 126.13002 * 359.95103 * 17 3 2 19 19 H 1.09001 * 109.47229 * 59.99666 * 1 2 3 20 20 H 1.08995 * 109.46745 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46932 * 300.00060 * 1 2 3 22 22 H 1.09000 * 109.47290 * 240.00620 * 2 1 3 23 23 H 1.08990 * 109.47249 * 119.99612 * 2 1 3 24 24 H 1.08002 * 125.89730 * 180.25807 * 5 4 3 25 25 H 1.09000 * 109.46974 * 144.69240 * 7 6 5 26 26 H 1.09001 * 109.46547 * 24.69330 * 7 6 5 27 27 H 1.09000 * 109.47486 * 60.00062 * 8 7 6 28 28 H 1.09001 * 109.47362 * 299.99339 * 8 7 6 29 29 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.47395 * 270.02782 * 18 17 3 31 31 H 1.09007 * 109.47037 * 30.03065 * 18 17 3 32 32 H 1.08998 * 109.47321 * 150.02466 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2935 2.1582 -1.1327 5 6 2.7031 3.3344 -0.7320 6 6 2.7116 3.3410 0.6666 7 6 3.1198 4.4952 1.5455 8 6 4.5882 4.3373 1.9452 9 6 4.9966 5.4919 2.8235 10 1 4.2817 6.2636 3.0680 11 6 6.2844 5.5656 3.3105 12 7 7.1564 4.6287 3.0083 13 14 6.7903 6.9963 4.3998 14 1 5.6337 7.9083 4.5881 15 1 7.2348 6.4807 5.7195 16 1 7.9051 7.7377 3.7570 17 6 2.2829 2.1298 1.0913 18 6 2.1282 1.6949 2.5258 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5137 0.8899 24 1 2.9885 4.1571 -1.3709 25 1 2.4987 4.5074 2.4411 26 1 2.9901 5.4303 1.0005 27 1 5.2094 4.3251 1.0496 28 1 4.7179 3.4022 2.4901 29 1 8.0625 4.6808 3.3507 30 1 1.1221 1.9327 2.8711 31 1 2.2930 0.6198 2.5994 32 1 2.8577 2.2174 3.1446 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = 51.140595 kcal Electronic energy + Delta-G solvation = -13352.246234 eV Core-core repulsion = 11120.773888 eV Total energy + Delta-G solvation = -2231.472346 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82636 -34.74498 -33.64471 -32.13877 -30.74668 -28.52245 -26.68084 -24.55852 -23.37515 -21.14720 -19.96531 -18.63684 -16.37209 -16.07015 -14.94156 -14.56625 -14.40052 -13.71428 -13.38682 -12.86651 -12.68544 -12.39734 -12.24509 -11.95100 -11.89527 -11.56270 -11.31700 -10.93672 -10.85105 -10.57836 -10.22846 -9.65648 -9.48765 -8.98353 -8.79414 -8.28180 -7.56153 -5.93298 -3.95661 2.31874 2.87343 3.34558 3.38255 3.42260 3.46770 4.51397 4.65575 4.96642 5.06294 5.17563 5.35111 5.42118 5.47005 5.49557 5.72191 5.81653 5.94326 6.07222 6.22103 6.26242 6.58363 6.82395 6.92086 7.09337 7.30345 7.53883 7.79258 7.95073 8.09996 8.20863 8.50524 9.12857 9.68111 11.17740 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.060789 B = 0.006504 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.495550 B = 4303.977693 C = 4427.733050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.132 3.868 3 N -0.379 5.379 4 N -0.311 5.311 5 C 0.049 3.951 6 C -0.209 4.209 7 C -0.039 4.039 8 C 0.029 3.971 9 C -0.518 4.518 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.285 1.285 17 C 0.072 3.928 18 C -0.089 4.089 19 H 0.063 0.937 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.178 0.822 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 -8.120 -3.153 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.010 3.990 3 N -0.164 5.164 4 N -0.132 5.132 5 C -0.136 4.136 6 C -0.220 4.220 7 C -0.077 4.077 8 C -0.008 4.008 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.054 4.054 18 C -0.147 4.147 19 H 0.082 0.918 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.195 0.805 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.718 -9.060 -4.136 15.379 hybrid contribution 0.670 1.206 1.194 1.825 sum -11.048 -7.854 -2.942 13.871 Atomic orbital electron populations 1.22174 0.94855 1.02471 1.03100 1.21490 0.94750 0.78957 1.03822 1.48420 1.52849 1.11586 1.03554 1.77191 1.23495 1.04358 1.08185 1.23734 0.99363 0.95459 0.95036 1.20335 1.10354 0.97257 0.94040 1.20101 0.99566 0.92444 0.95603 1.19067 0.88924 0.96658 0.96130 1.21355 0.96170 1.08157 1.29981 0.92610 1.25023 0.96760 0.96083 0.96598 1.69989 1.04458 1.33594 1.45510 0.86582 0.78548 0.82740 0.80401 1.19723 1.21119 1.21103 1.20780 1.01927 0.92344 0.90331 1.20427 1.03284 1.01218 0.89783 0.91837 0.90979 0.92086 0.89294 0.89398 0.80503 0.92953 0.92661 0.96693 0.96778 0.93180 0.91009 0.91985 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.13 1.53 6.96 -4.04 -0.03 1.50 16 3 N -0.38 -6.26 3.61 -57.14 -0.21 -6.46 16 4 N -0.31 -5.76 12.58 30.62 0.39 -5.38 16 5 C 0.05 0.92 11.96 -17.37 -0.21 0.72 16 6 C -0.21 -4.12 5.35 -105.05 -0.56 -4.68 16 7 C -0.04 -0.82 5.19 -27.88 -0.14 -0.97 16 8 C 0.03 0.77 4.96 -27.88 -0.14 0.64 16 9 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 13 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 C 0.07 1.26 6.93 -82.26 -0.57 0.69 16 18 C -0.09 -1.28 9.80 36.00 0.35 -0.92 16 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.09 0.86 7.05 -51.93 -0.37 0.49 16 24 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 25 H 0.05 1.07 8.01 -51.93 -0.42 0.65 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.39 7.77 -51.93 -0.40 -0.02 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.74 7.08 -51.92 -0.37 0.37 16 32 H 0.09 1.54 7.51 -51.93 -0.39 1.15 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -32.69 274.82 -6.16 -38.85 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.87 Total: -3.52 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.33 Total: -17.79 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.92 Total: -38.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.69 -6.16 -38.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.991 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds