Wall clock time and date at job start Mon Mar 30 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28341 * 124.90595 * 2 1 4 4 C 1.33486 * 117.83565 * 180.02562 * 3 2 1 5 5 C 1.33866 * 113.18531 * 359.95335 * 4 3 2 6 6 S 1.70757 * 124.90251 * 180.02562 * 2 1 3 7 7 C 1.51713 * 110.89315 * 180.02562 * 5 4 3 8 8 H 1.09002 * 110.46644 * 136.11371 * 7 5 4 9 9 C 1.50703 * 110.37065 * 258.40033 * 7 5 4 10 10 H 1.07994 * 119.99603 * 115.38350 * 9 7 5 11 11 C 1.37875 * 119.99838 * 295.38495 * 9 7 5 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.54302 * 104.80532 * 17.23411 * 7 5 4 18 18 C 1.52614 * 137.15178 * 179.90767 * 4 3 2 19 19 H 1.08998 * 109.46647 * 269.95598 * 1 2 3 20 20 H 1.08996 * 109.46337 * 29.95240 * 1 2 3 21 21 H 1.09000 * 109.47019 * 149.95482 * 1 2 3 22 22 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 23 23 H 1.08996 * 110.97525 * 91.91956 * 17 7 5 24 24 H 1.09006 * 110.96713 * 215.68928 * 17 7 5 25 25 H 1.09007 * 110.31576 * 43.73793 * 18 4 3 26 26 H 1.09002 * 110.31894 * 281.54778 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2414 1.0525 0.0000 4 6 3.5662 0.8882 -0.0005 5 6 3.9377 -0.3978 0.0000 6 16 2.4841 -1.4004 -0.0006 7 6 5.4496 -0.5242 0.0000 8 1 5.7681 -1.2891 0.7083 9 6 5.9486 -0.8516 -1.3838 10 1 6.5733 -0.1474 -1.9131 11 6 5.6077 -2.0501 -1.9739 12 7 4.8474 -2.9079 -1.3291 13 14 6.2269 -2.4562 -3.6889 14 1 7.0581 -1.3339 -4.1938 15 1 5.0700 -2.6622 -4.5970 16 1 7.0442 -3.6951 -3.6397 17 6 5.9612 0.8630 0.4414 18 6 4.8043 1.7805 -0.0024 19 1 -0.3632 -0.0008 1.0277 20 1 -0.3632 0.8904 -0.5131 21 1 -0.3633 -0.8896 -0.5145 22 1 4.5262 -2.6971 -0.4384 23 1 6.0977 0.9028 1.5220 24 1 6.8849 1.1211 -0.0768 25 1 4.6799 2.6019 0.7033 26 1 4.9912 2.1664 -1.0046 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220258.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:49 Heat of formation + Delta-G solvation = 32.761084 kcal Electronic energy + Delta-G solvation = -11686.556561 eV Core-core repulsion = 9663.488334 eV Total energy + Delta-G solvation = -2023.068227 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.35854 -35.86397 -32.59367 -30.37744 -27.45745 -26.29732 -23.99041 -21.86443 -20.14718 -17.98947 -17.51986 -16.41206 -14.76633 -13.93581 -13.88620 -13.35663 -13.00402 -12.90499 -12.37039 -12.02373 -11.76061 -11.51722 -10.97105 -10.72432 -10.45336 -10.22738 -10.18992 -9.84609 -9.14692 -8.75361 -8.48083 -8.05059 -7.46249 -6.53019 -4.27176 1.77742 2.24280 2.84418 3.36435 3.39892 3.52992 3.65885 4.40776 4.56614 5.17597 5.48097 5.64541 5.70990 5.77469 5.86123 6.02198 6.23858 6.31854 6.64593 6.64993 6.72336 6.89339 7.11143 7.26189 7.93961 8.24101 8.62836 8.64638 9.42848 10.81922 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.013881 C = 0.011107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.590971 B = 2016.673363 C = 2520.335523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.015 4.015 3 N -0.466 5.466 4 C -0.016 4.016 5 C -0.165 4.165 6 S 0.137 5.863 7 C 0.097 3.903 8 H 0.030 0.970 9 C -0.578 4.578 10 H 0.061 0.939 11 C 0.017 3.983 12 N -0.889 5.889 13 Si 1.075 2.925 14 H -0.287 1.287 15 H -0.286 1.286 16 H -0.284 1.284 17 C -0.104 4.104 18 C -0.019 4.019 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.268 0.732 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 3.664 2.422 5.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.293 4.293 3 N -0.181 5.181 4 C -0.144 4.144 5 C -0.287 4.287 6 S 0.393 5.607 7 C 0.076 3.924 8 H 0.048 0.952 9 C -0.616 4.616 10 H 0.079 0.921 11 C -0.189 4.189 12 N -0.525 5.525 13 Si 0.902 3.098 14 H -0.213 1.213 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.144 4.144 18 C -0.059 4.059 19 H 0.091 0.909 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.222 1.926 1.250 4.806 hybrid contribution 0.409 1.850 1.011 2.147 sum -3.813 3.775 2.261 5.823 Atomic orbital electron populations 1.20201 0.86459 1.03025 1.02559 1.26587 1.00959 0.92695 1.09080 1.65256 1.04784 1.32831 1.15263 1.21397 0.89563 0.94601 1.08854 1.28061 1.02878 0.95522 1.02261 1.83934 0.96824 1.10600 1.69354 1.18257 0.82583 0.93520 0.98051 0.95204 1.22041 1.33232 1.05405 1.00950 0.92079 1.25970 0.94823 0.92867 1.05196 1.70833 1.30823 1.36520 1.14323 0.83447 0.76250 0.75800 0.74257 1.21281 1.21193 1.21009 1.22287 0.97307 0.95740 0.99057 1.20585 0.88450 0.95577 1.01244 0.90871 0.90519 0.90892 0.91878 0.92703 0.90439 0.92185 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.46 36.01 0.38 -0.56 15 2 C -0.01 -0.30 7.37 -13.73 -0.10 -0.40 15 3 N -0.47 -10.66 10.54 -7.23 -0.08 -10.74 15 4 C -0.02 -0.38 7.70 -82.45 -0.63 -1.01 15 5 C -0.17 -4.10 5.74 -35.34 -0.20 -4.30 15 6 S 0.14 3.08 21.20 -107.50 -2.28 0.80 15 7 C 0.10 2.42 2.46 -91.74 -0.23 2.20 15 8 H 0.03 0.79 7.94 -51.93 -0.41 0.37 15 9 C -0.58 -15.67 8.49 -34.44 -0.29 -15.97 15 10 H 0.06 1.63 7.59 -52.49 -0.40 1.23 15 11 C 0.02 0.47 5.34 -17.82 -0.10 0.37 15 12 N -0.89 -25.70 13.11 55.43 0.73 -24.98 15 13 Si 1.07 24.67 29.90 -169.99 -5.08 19.58 15 14 H -0.29 -6.26 7.11 56.52 0.40 -5.86 15 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 17 C -0.10 -2.13 6.62 -25.43 -0.17 -2.30 15 18 C -0.02 -0.38 6.79 -26.31 -0.18 -0.56 15 19 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 20 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.27 7.63 4.87 -40.82 -0.20 7.44 15 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.08 1.49 7.76 -51.93 -0.40 1.09 15 25 H 0.06 1.07 8.14 -51.92 -0.42 0.64 15 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 LS Contribution 234.05 15.07 3.53 3.53 Total: -1.00 -30.67 234.05 -7.45 -38.12 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -2.74 Total: -3.79 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -1.52 Total: -22.52 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.65 Total: -35.71 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.58 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.28 Total: 0.80 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.67 -7.45 -38.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220258.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.877 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds