Wall clock time and date at job start Mon Mar 30 2020 02:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47131 * 2 1 4 4 C 1.34504 * 125.68128 * 125.00099 * 3 2 1 5 5 C 1.39272 * 107.19483 * 179.97438 * 4 3 2 6 6 C 1.41599 * 126.56323 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99963 * 186.89075 * 6 5 4 8 8 C 1.39694 * 119.99576 * 6.89224 * 6 5 4 9 9 N 1.31027 * 119.99850 * 10.65556 * 8 6 5 10 10 Si 1.86798 * 119.99974 * 190.66141 * 8 6 5 11 11 H 1.48497 * 109.47478 * 94.06664 * 10 8 6 12 12 H 1.48505 * 109.47034 * 214.06719 * 10 8 6 13 13 H 1.48499 * 109.46802 * 334.06398 * 10 8 6 14 14 C 1.41887 * 106.88436 * 0.02562 * 5 4 3 15 15 C 1.50704 * 125.97858 * 180.02562 * 14 5 4 16 16 C 1.53004 * 109.46700 * 120.00212 * 15 14 5 17 17 C 1.52996 * 109.47251 * 239.99921 * 15 14 5 18 18 N 1.30325 * 108.04733 * 359.74025 * 14 5 4 19 19 H 1.09000 * 109.47042 * 299.99753 * 1 2 3 20 20 H 1.08992 * 109.47572 * 60.00289 * 1 2 3 21 21 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47042 * 240.00246 * 2 1 3 23 23 H 1.09004 * 109.47309 * 120.00023 * 2 1 3 24 24 H 1.08009 * 126.40023 * 359.96146 * 4 3 2 25 25 H 0.97002 * 119.99467 * 180.02562 * 9 8 6 26 26 H 1.08997 * 109.46916 * 0.02562 * 15 14 5 27 27 H 1.09000 * 109.47084 * 299.99910 * 16 15 14 28 28 H 1.08997 * 109.47295 * 60.00405 * 16 15 14 29 29 H 1.09006 * 109.46722 * 180.02562 * 16 15 14 30 30 H 1.09003 * 109.47216 * 60.00009 * 17 15 14 31 31 H 1.08998 * 109.47187 * 180.02562 * 17 15 14 32 32 H 1.09005 * 109.47316 * 300.00273 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8706 1.9119 0.8949 5 6 3.0725 3.2415 0.5329 6 6 3.8986 4.1805 1.1969 7 1 3.8929 5.2162 0.8910 8 6 4.7211 3.7670 2.2477 9 7 4.8890 2.4892 2.4844 10 14 5.5812 5.0356 3.3154 11 1 4.7537 5.3149 4.5163 12 1 6.9052 4.5116 3.7374 13 1 5.7688 6.2888 2.5411 14 6 2.2921 3.4753 -0.6288 15 6 2.1940 4.7768 -1.3822 16 6 2.6689 4.5697 -2.8219 17 6 0.7404 5.2542 -1.3885 18 7 1.6798 2.3661 -0.9338 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.3152 1.4023 1.7371 25 1 5.4598 2.2022 3.2142 26 1 2.8205 5.5254 -0.8974 27 1 3.7045 4.2296 -2.8175 28 1 2.0426 3.8210 -3.3069 29 1 2.5983 5.5111 -3.3667 30 1 0.4020 5.4017 -0.3629 31 1 0.6693 6.1952 -1.9338 32 1 0.1141 4.5054 -1.8735 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261230570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:56 Heat of formation + Delta-G solvation = 47.856152 kcal Electronic energy + Delta-G solvation = -13775.179489 eV Core-core repulsion = 11543.564719 eV Total energy + Delta-G solvation = -2231.614770 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.34256 -34.98086 -33.46567 -32.39769 -28.54474 -28.32087 -26.44734 -24.61726 -23.11666 -20.76443 -19.64308 -17.46525 -16.70458 -15.51152 -14.38134 -14.36557 -13.70628 -13.43846 -13.22881 -12.68290 -12.25710 -11.78385 -11.68137 -11.57468 -11.46836 -11.22681 -11.04767 -10.77311 -10.53333 -10.38271 -10.26997 -10.06491 -9.52654 -9.11996 -8.68043 -7.63127 -6.97179 -6.34211 -3.86631 3.15721 3.25899 3.29804 3.53149 3.94490 4.25566 4.33998 5.35666 5.54390 5.63536 5.68381 5.72907 5.78821 6.01542 6.03221 6.22945 6.23898 6.36470 6.49009 6.52157 6.56801 6.65275 6.89959 6.98090 7.07331 7.43178 7.68842 7.90264 8.04164 8.52358 8.92455 9.19092 9.27250 9.54505 10.69570 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.012432 C = 0.008926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.042131 B = 2251.677950 C = 3135.995365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 N -0.391 5.391 4 C -0.051 4.051 5 C -0.039 4.039 6 C -0.427 4.427 7 H 0.069 0.931 8 C 0.058 3.942 9 N -0.846 5.846 10 Si 0.907 3.093 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.021 3.979 15 C 0.000 4.000 16 C -0.135 4.135 17 C -0.135 4.135 18 N -0.329 5.329 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.181 0.819 25 H 0.268 0.732 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -0.675 -3.279 5.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.023 3.977 3 N -0.180 5.180 4 C -0.193 4.193 5 C -0.049 4.049 6 C -0.462 4.462 7 H 0.087 0.913 8 C -0.150 4.150 9 N -0.478 5.478 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.192 1.192 14 C -0.145 4.145 15 C -0.021 4.021 16 C -0.193 4.193 17 C -0.193 4.193 18 N -0.153 5.153 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.197 0.803 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.126 -1.493 -3.891 6.607 hybrid contribution 1.101 0.734 1.310 1.862 sum -4.025 -0.759 -2.581 4.842 Atomic orbital electron populations 1.22034 0.95679 1.01091 1.02954 1.21143 0.94386 0.80434 1.01720 1.47689 1.38951 1.08121 1.23200 1.23524 1.00511 0.96406 0.98829 1.17951 0.99417 0.93081 0.94433 1.18711 1.19511 0.94844 1.13164 0.91327 1.25512 0.96291 0.95415 0.97778 1.69614 1.34897 1.15006 1.28332 0.86320 0.78493 0.81404 0.80435 1.20253 1.20972 1.19220 1.22060 1.00953 0.93625 0.97889 1.19270 0.96293 0.92513 0.94019 1.21753 1.01263 1.00293 0.95961 1.21760 0.96639 0.99667 1.01227 1.76205 1.26085 0.97623 1.15407 0.92617 0.91750 0.92279 0.92135 0.90136 0.80251 0.92130 0.90099 0.92966 0.92920 0.93610 0.93040 0.93591 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.09 37.16 0.37 -2.11 16 2 C 0.15 2.65 7.20 -4.05 -0.03 2.62 16 3 N -0.39 -9.29 3.65 -60.41 -0.22 -9.51 16 4 C -0.05 -1.36 10.37 -16.00 -0.17 -1.53 16 5 C -0.04 -1.09 5.90 -106.84 -0.63 -1.72 16 6 C -0.43 -11.86 9.12 -37.76 -0.34 -12.20 16 7 H 0.07 1.83 6.95 -52.49 -0.36 1.46 16 8 C 0.06 1.56 5.45 -17.35 -0.09 1.46 16 9 N -0.85 -22.99 10.57 55.54 0.59 -22.40 16 10 Si 0.91 20.22 29.57 -169.99 -5.03 15.19 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.02 0.52 5.79 -81.83 -0.47 0.04 16 15 C 0.00 -0.01 3.30 -91.77 -0.30 -0.31 16 16 C -0.13 -2.44 9.18 37.16 0.34 -2.09 16 17 C -0.13 -2.41 9.18 37.16 0.34 -2.06 16 18 N -0.33 -8.04 12.30 34.00 0.42 -7.62 16 19 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 20 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 24 H 0.18 4.90 6.02 -52.48 -0.32 4.58 16 25 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 26 H 0.08 1.69 6.95 -51.93 -0.36 1.33 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 270.69 15.07 4.08 4.08 Total: -1.00 -29.84 270.69 -5.97 -35.81 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.82 Total: 2.36 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.98 Total: -17.91 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.78 Total: -39.54 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.84 -5.97 -35.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.668 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds