Wall clock time and date at job start Mon Mar 30 2020 02:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28331 * 124.90267 * 2 1 4 4 C 1.33491 * 117.84020 * 179.97438 * 3 2 1 5 5 C 1.33872 * 113.17639 * 359.97438 * 4 3 2 6 6 S 1.70748 * 124.90515 * 180.02562 * 2 1 3 7 7 C 1.51714 * 110.88837 * 180.08129 * 5 4 3 8 8 C 1.54298 * 104.81080 * 17.21399 * 7 5 4 9 9 C 1.52613 * 137.15720 * 179.97438 * 4 3 2 10 10 H 1.08999 * 110.32079 * 281.62683 * 9 4 3 11 11 C 1.50706 * 110.31307 * 43.71527 * 9 4 3 12 12 H 1.07998 * 119.99503 * 118.54711 * 11 9 4 13 13 C 1.37871 * 120.00434 * 298.54175 * 11 9 4 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 9 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 H 1.08998 * 109.46770 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47345 * 300.01999 * 1 2 3 21 21 H 1.09001 * 109.47262 * 60.02160 * 1 2 3 22 22 H 1.09003 * 110.36808 * 136.06034 * 7 5 4 23 23 H 1.08999 * 110.37364 * 258.39553 * 7 5 4 24 24 H 1.08997 * 110.97687 * 215.69670 * 8 7 5 25 25 H 1.08999 * 110.96374 * 91.92993 * 8 7 5 26 26 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2413 1.0525 0.0000 4 6 3.5661 0.8883 0.0005 5 6 3.9377 -0.3978 0.0015 6 16 2.4841 -1.4003 -0.0006 7 6 5.4495 -0.5241 0.0041 8 6 5.9604 0.8632 0.4460 9 6 4.8042 1.7806 0.0003 10 1 4.9912 2.1684 -1.0011 11 6 4.6311 2.9160 0.9762 12 1 5.3065 3.0165 1.8128 13 6 3.6105 3.8262 0.8008 14 7 2.7914 3.7069 -0.2211 15 14 3.3964 5.2339 2.0100 16 1 2.2397 6.0690 1.5978 17 1 3.1524 4.6864 3.3688 18 1 4.6268 6.0652 2.0248 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5141 0.8898 21 1 -0.3634 0.5135 -0.8902 22 1 5.7652 -1.2887 0.7140 23 1 5.8123 -0.7608 -0.9961 24 1 6.8848 1.1213 -0.0707 25 1 6.0952 0.9030 1.5269 26 1 2.9027 2.9762 -0.8492 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261235448.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:46 Heat of formation + Delta-G solvation = 22.011947 kcal Electronic energy + Delta-G solvation = -11739.017140 eV Core-core repulsion = 9715.482796 eV Total energy + Delta-G solvation = -2023.534345 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.12523 -37.29499 -34.65814 -31.83364 -29.50937 -27.60310 -25.63716 -23.47180 -21.81330 -19.80249 -19.43616 -17.88592 -16.45830 -15.67174 -15.35739 -15.14132 -14.71369 -14.58284 -14.13961 -13.40220 -13.35668 -12.95331 -12.69352 -12.54515 -12.35330 -11.99077 -11.82107 -11.62999 -10.65947 -10.40507 -10.12743 -9.98601 -9.20382 -8.46914 -6.21669 -0.02663 0.47100 0.91328 1.50186 1.59705 1.77731 2.10005 2.61915 3.18314 3.36865 3.83706 3.99391 4.24837 4.30877 4.57204 4.63941 4.73893 4.79793 4.95628 5.03110 5.10854 5.18700 5.44284 5.55251 6.05771 6.30542 6.74559 7.18420 7.61357 8.93442 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.032491 B = 0.013980 C = 0.010425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.579929 B = 2002.449754 C = 2685.296797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.026 3.974 3 N -0.482 5.482 4 C 0.055 3.945 5 C -0.291 4.291 6 S 0.132 5.868 7 C -0.023 4.023 8 C -0.095 4.095 9 C 0.084 3.916 10 H 0.003 0.997 11 C -0.627 4.627 12 H 0.047 0.953 13 C -0.024 4.024 14 N -0.900 5.900 15 Si 1.111 2.889 16 H -0.286 1.286 17 H -0.281 1.281 18 H -0.267 1.267 19 H 0.110 0.890 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -10.625 0.702 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.254 4.254 3 N -0.196 5.196 4 C -0.074 4.074 5 C -0.411 4.411 6 S 0.387 5.613 7 C -0.063 4.063 8 C -0.134 4.134 9 C 0.063 3.937 10 H 0.021 0.979 11 C -0.665 4.665 12 H 0.065 0.935 13 C -0.228 4.228 14 N -0.534 5.534 15 Si 0.934 3.066 16 H -0.211 1.211 17 H -0.207 1.207 18 H -0.193 1.193 19 H 0.129 0.871 20 H 0.100 0.900 21 H 0.103 0.897 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.082 0.918 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.947 -9.888 1.003 10.128 hybrid contribution 1.316 -0.296 -0.458 1.424 sum -0.632 -10.184 0.546 10.219 Atomic orbital electron populations 1.20495 0.83110 1.04805 1.04149 1.27749 1.03269 0.90287 1.04113 1.65552 1.06089 1.32704 1.15248 1.22756 0.90551 0.95392 0.98699 1.27492 1.02914 0.96365 1.14287 1.82612 0.96032 1.10856 1.71792 1.20659 0.84564 0.98253 1.02781 1.22252 0.97276 0.92904 1.00973 1.18471 0.86832 0.92811 0.95603 0.97888 1.22159 1.17789 1.13207 1.13298 0.93493 1.27053 0.92594 1.02937 1.00205 1.70675 1.37086 1.32185 1.13411 0.83026 0.76725 0.73397 0.73465 1.21150 1.20747 1.19264 0.87132 0.90024 0.89722 0.88892 0.88939 0.89224 0.91791 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.94 10.47 71.24 0.75 -1.19 15 2 C 0.03 1.05 7.37 88.62 0.65 1.70 15 3 N -0.48 -25.13 8.51 -176.80 -1.50 -26.64 15 4 C 0.06 2.85 5.97 41.93 0.25 3.10 15 5 C -0.29 -12.19 7.42 25.02 0.19 -12.00 15 6 S 0.13 4.52 23.17 -56.49 -1.31 3.21 15 7 C -0.02 -0.78 6.80 30.61 0.21 -0.58 15 8 C -0.09 -3.84 6.60 31.44 0.21 -3.63 15 9 C 0.08 4.45 2.49 -11.27 -0.03 4.42 15 10 H 0.00 0.19 8.04 -2.39 -0.02 0.17 15 11 C -0.63 -37.01 8.53 25.60 0.22 -36.79 15 12 H 0.05 2.71 7.63 -2.91 -0.02 2.69 15 13 C -0.02 -1.45 5.30 84.65 0.45 -1.00 15 14 N -0.90 -57.66 12.75 21.45 0.27 -57.39 15 15 Si 1.11 53.20 29.90 68.60 2.05 55.25 15 16 H -0.29 -13.69 7.11 99.48 0.71 -12.98 15 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 19 H 0.11 2.32 8.12 -2.39 -0.02 2.30 15 20 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 21 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 22 H 0.09 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.06 2.62 7.80 -2.39 -0.02 2.60 15 26 H 0.27 17.68 5.42 -92.71 -0.50 17.18 15 Total: -1.00 -73.24 234.34 3.84 -69.40 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.44 Total: 2.13 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 2.89 Total: -45.96 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.23 Total: -84.02 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 2.05 Total: 55.25 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.31 Total: 3.21 kcal Total: -73.24 3.84 -69.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235448.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.409 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds