Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47208 * 2 1 4 4 C 1.34944 * 126.03994 * 125.25659 * 3 2 1 5 5 C 1.35315 * 107.74919 * 180.14463 * 4 3 2 6 6 C 1.50706 * 126.04243 * 179.87169 * 5 4 3 7 7 C 1.52999 * 109.46953 * 264.69516 * 6 5 4 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72054 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99350 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 89.99430 * 12 10 8 14 14 H 1.48494 * 109.47031 * 209.99977 * 12 10 8 15 15 H 1.48504 * 109.46680 * 329.99678 * 12 10 8 16 16 C 1.39870 * 107.91995 * 359.61294 * 5 4 3 17 17 C 1.50692 * 125.90032 * 180.25874 * 16 5 4 18 18 N 1.30839 * 108.20056 * 0.23977 * 16 5 4 19 19 H 1.09004 * 109.46676 * 60.00047 * 1 2 3 20 20 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47075 * 300.00813 * 1 2 3 22 22 H 1.09000 * 109.47653 * 239.99874 * 2 1 3 23 23 H 1.09007 * 109.46945 * 119.99500 * 2 1 3 24 24 H 1.08008 * 126.12891 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.46974 * 144.69264 * 6 5 4 26 26 H 1.09001 * 109.46547 * 24.69354 * 6 5 4 27 27 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 28 28 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 29 29 H 0.97005 * 119.99656 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.46955 * 89.99995 * 17 16 5 31 31 H 1.08998 * 109.47267 * 209.99518 * 17 16 5 32 32 H 1.09001 * 109.47711 * 330.00092 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8769 1.9198 0.8910 5 6 3.0715 3.2137 0.5461 6 6 3.9548 4.2000 1.2659 7 6 3.1130 5.0154 2.2495 8 6 3.9965 6.0012 2.9697 9 1 5.0535 6.0390 2.7513 10 6 3.4562 6.8513 3.9111 11 7 4.2273 7.7113 4.5400 12 14 1.6294 6.7807 4.2945 13 1 1.3915 5.8123 5.3949 14 1 1.1582 8.1266 4.7090 15 1 0.8861 6.3471 3.0842 16 6 2.3127 3.4724 -0.6000 17 6 2.2362 4.7881 -1.3307 18 7 1.6809 2.3747 -0.9283 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.3265 1.4100 1.7304 25 1 4.4173 4.8699 0.5411 26 1 4.7310 3.6624 1.8107 27 1 2.6505 4.3454 2.9743 28 1 2.3369 5.5530 1.7047 29 1 3.8473 8.3092 5.2027 30 1 3.0116 4.8242 -2.0960 31 1 1.2575 4.8865 -1.8003 32 1 2.3843 5.6051 -0.6246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = 54.754357 kcal Electronic energy + Delta-G solvation = -13327.393023 eV Core-core repulsion = 11096.077382 eV Total energy + Delta-G solvation = -2231.315641 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.88037 -35.06902 -33.54926 -31.70164 -31.16859 -28.67265 -27.37552 -24.90194 -22.72967 -20.92294 -20.05495 -18.79958 -16.83723 -16.27640 -15.29118 -14.23498 -14.07011 -14.06292 -13.22733 -13.18422 -12.70513 -12.48425 -12.26230 -12.11058 -11.85208 -11.69520 -11.39419 -11.32957 -10.92202 -10.37367 -10.00207 -9.77008 -9.55980 -9.08430 -8.83475 -8.47558 -7.75145 -5.98887 -3.95864 2.23352 2.76945 3.21926 3.34983 3.42437 3.48785 4.51093 4.53617 4.88948 5.04861 5.15639 5.21645 5.36040 5.43835 5.61924 5.70647 5.92874 5.96487 6.01164 6.09966 6.31651 6.44956 6.65151 6.71861 6.92785 7.16292 7.38514 7.45102 7.57245 7.87376 8.11349 8.60605 9.07137 9.64831 11.14689 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.007693 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.670640 B = 3638.586028 C = 3828.626324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 N -0.384 5.384 4 C 0.040 3.960 5 C -0.210 4.210 6 C -0.030 4.030 7 C -0.006 4.006 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.066 3.934 11 N -0.906 5.906 12 Si 0.877 3.123 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.265 1.265 16 C 0.076 3.924 17 C -0.074 4.074 18 N -0.306 5.306 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.169 0.831 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.008 0.992 28 H 0.015 0.985 29 H 0.262 0.738 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 -13.655 -8.940 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.167 5.167 4 C -0.104 4.104 5 C -0.221 4.221 6 C -0.069 4.069 7 C -0.043 4.043 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.134 4.134 11 N -0.545 5.545 12 Si 0.705 3.295 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.189 1.189 16 C -0.090 4.090 17 C -0.132 4.132 18 N -0.129 5.129 19 H 0.088 0.912 20 H 0.089 0.911 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.110 0.890 24 H 0.186 0.814 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.521 -14.231 -9.614 18.370 hybrid contribution -0.405 0.245 1.072 1.171 sum -6.926 -13.986 -8.542 17.791 Atomic orbital electron populations 1.22049 0.94246 1.02327 1.03618 1.21528 0.95748 0.78149 1.03112 1.48400 1.36595 1.09704 1.22031 1.22305 0.96552 0.94996 0.96566 1.20494 1.06921 0.95040 0.99657 1.19899 0.95711 0.94376 0.96923 1.19542 0.95879 0.94877 0.94028 1.21208 0.96449 1.17183 1.20736 0.90966 1.25011 0.97629 0.95093 0.95714 1.69922 1.35471 1.22403 1.26726 0.86810 0.86487 0.77120 0.79096 1.20480 1.21472 1.18929 1.22259 0.95970 0.94913 0.95888 1.20193 1.02138 0.91242 0.99648 1.77114 1.24644 0.96921 1.14253 0.91243 0.91130 0.92089 0.90447 0.89048 0.81425 0.91961 0.92369 0.97384 0.96625 0.92851 0.90935 0.91580 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.10 37.16 0.38 -1.25 16 2 C 0.14 1.43 7.23 -4.04 -0.03 1.40 16 3 N -0.38 -5.90 3.68 -61.36 -0.23 -6.12 16 4 C 0.04 0.64 11.36 -17.23 -0.20 0.45 16 5 C -0.21 -3.92 5.35 -105.05 -0.56 -4.48 16 6 C -0.03 -0.63 5.27 -27.88 -0.15 -0.77 16 7 C -0.01 -0.14 4.02 -27.88 -0.11 -0.25 16 8 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 9 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 10 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 11 N -0.91 -28.21 13.96 55.43 0.77 -27.43 16 12 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 16 C 0.08 1.37 7.22 -82.41 -0.59 0.78 16 17 C -0.07 -1.13 10.21 36.00 0.37 -0.76 16 18 N -0.31 -5.41 12.42 33.67 0.42 -4.99 16 19 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 24 H 0.17 2.22 8.06 -52.48 -0.42 1.80 16 25 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 28 H 0.02 0.39 6.94 -51.93 -0.36 0.03 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 LS Contribution 273.89 15.07 4.13 4.13 Total: -1.00 -33.14 273.89 -5.86 -39.00 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.96 Total: -3.92 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -1.33 Total: -18.25 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.97 Total: -38.55 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.14 -5.86 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.757 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds