Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47208 * 2 1 4 4 C 1.34944 * 126.03994 * 125.25659 * 3 2 1 5 5 C 1.35315 * 107.74919 * 180.14463 * 4 3 2 6 6 C 1.50706 * 126.04243 * 179.87169 * 5 4 3 7 7 C 1.52999 * 109.46953 * 264.69516 * 6 5 4 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72054 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99350 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 89.99430 * 12 10 8 14 14 H 1.48494 * 109.47031 * 209.99977 * 12 10 8 15 15 H 1.48504 * 109.46680 * 329.99678 * 12 10 8 16 16 C 1.39870 * 107.91995 * 359.61294 * 5 4 3 17 17 C 1.50692 * 125.90032 * 180.25874 * 16 5 4 18 18 N 1.30839 * 108.20056 * 0.23977 * 16 5 4 19 19 H 1.09004 * 109.46676 * 60.00047 * 1 2 3 20 20 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47075 * 300.00813 * 1 2 3 22 22 H 1.09000 * 109.47653 * 239.99874 * 2 1 3 23 23 H 1.09007 * 109.46945 * 119.99500 * 2 1 3 24 24 H 1.08008 * 126.12891 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.46974 * 144.69264 * 6 5 4 26 26 H 1.09001 * 109.46547 * 24.69354 * 6 5 4 27 27 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 28 28 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 29 29 H 0.97005 * 119.99656 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.46955 * 89.99995 * 17 16 5 31 31 H 1.08998 * 109.47267 * 209.99518 * 17 16 5 32 32 H 1.09001 * 109.47711 * 330.00092 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8769 1.9198 0.8910 5 6 3.0715 3.2137 0.5461 6 6 3.9548 4.2000 1.2659 7 6 3.1130 5.0154 2.2495 8 6 3.9965 6.0012 2.9697 9 1 5.0535 6.0390 2.7513 10 6 3.4562 6.8513 3.9111 11 7 4.2273 7.7113 4.5400 12 14 1.6294 6.7807 4.2945 13 1 1.3915 5.8123 5.3949 14 1 1.1582 8.1266 4.7090 15 1 0.8861 6.3471 3.0842 16 6 2.3127 3.4724 -0.6000 17 6 2.2362 4.7881 -1.3307 18 7 1.6809 2.3747 -0.9283 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.3265 1.4100 1.7304 25 1 4.4173 4.8699 0.5411 26 1 4.7310 3.6624 1.8107 27 1 2.6505 4.3454 2.9743 28 1 2.3369 5.5530 1.7047 29 1 3.8473 8.3092 5.2027 30 1 3.0116 4.8242 -2.0960 31 1 1.2575 4.8865 -1.8003 32 1 2.3843 5.6051 -0.6246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = 34.015979 kcal Electronic energy + Delta-G solvation = -13328.292307 eV Core-core repulsion = 11096.077382 eV Total energy + Delta-G solvation = -2232.214925 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.13482 -36.41036 -35.24283 -33.61494 -32.25510 -30.30290 -28.56686 -26.61078 -23.81734 -22.64824 -21.43248 -20.13262 -18.89277 -17.52215 -16.47097 -16.17573 -15.48006 -15.16979 -14.72654 -14.63707 -14.39881 -13.84557 -13.60015 -13.41992 -13.00838 -12.95649 -12.80162 -12.72882 -12.39578 -11.95769 -11.79841 -11.65401 -11.37751 -11.07535 -10.72474 -10.06946 -9.10035 -8.26220 -6.28583 0.99023 1.35038 1.37498 1.50200 1.70918 1.85870 2.38007 3.09454 3.58671 3.99234 4.08633 4.14861 4.37862 4.39825 4.48680 4.62385 4.79698 4.81277 4.84526 4.89993 5.03873 5.13839 5.16498 5.20426 5.28530 5.52982 5.68624 5.70732 5.87843 6.25950 6.33982 6.79475 6.83578 7.35947 8.90590 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.007693 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.670640 B = 3638.586028 C = 3828.626324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 N -0.378 5.378 4 C 0.053 3.947 5 C -0.247 4.247 6 C -0.017 4.017 7 C 0.002 3.998 8 C -0.526 4.526 9 H 0.037 0.963 10 C 0.007 3.993 11 N -0.951 5.951 12 Si 0.945 3.055 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.254 1.254 16 C 0.060 3.940 17 C -0.072 4.072 18 N -0.325 5.325 19 H 0.049 0.951 20 H 0.103 0.897 21 H 0.046 0.954 22 H 0.093 0.907 23 H 0.124 0.876 24 H 0.199 0.801 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.010 0.990 28 H 0.012 0.988 29 H 0.265 0.735 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -15.778 -9.166 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.004 3.996 3 N -0.161 5.161 4 C -0.093 4.093 5 C -0.258 4.258 6 C -0.055 4.055 7 C -0.036 4.036 8 C -0.564 4.564 9 H 0.056 0.944 10 C -0.189 4.189 11 N -0.592 5.592 12 Si 0.769 3.231 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.178 1.178 16 C -0.105 4.105 17 C -0.131 4.131 18 N -0.149 5.149 19 H 0.068 0.932 20 H 0.122 0.878 21 H 0.065 0.935 22 H 0.111 0.889 23 H 0.142 0.858 24 H 0.216 0.784 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.073 -16.381 -9.865 20.757 hybrid contribution 0.142 0.818 1.119 1.394 sum -7.931 -15.564 -8.746 19.535 Atomic orbital electron populations 1.22013 0.93797 1.03960 1.01907 1.22032 0.96158 0.75901 1.05517 1.48846 1.35542 1.10830 1.20835 1.22732 0.95491 0.94363 0.96711 1.20356 1.08546 0.95957 1.00917 1.19602 0.95468 0.94422 0.96033 1.19437 0.95456 0.94245 0.94417 1.21540 0.95635 1.18210 1.21050 0.94447 1.25919 1.02719 0.94679 0.95617 1.70064 1.37825 1.23572 1.27748 0.85729 0.80351 0.77585 0.79404 1.19267 1.20840 1.17822 1.22573 0.95997 0.95824 0.96099 1.20217 1.03427 0.89876 0.99575 1.77069 1.25127 0.97374 1.15370 0.93184 0.87848 0.93475 0.88865 0.85846 0.78397 0.92610 0.92225 0.97184 0.96992 0.92572 0.89337 0.90406 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.10 71.98 0.73 -1.95 16 2 C 0.12 2.14 7.23 86.38 0.62 2.77 16 3 N -0.38 -10.59 3.68 -348.05 -1.28 -11.87 16 4 C 0.05 1.57 11.36 83.54 0.95 2.52 16 5 C -0.25 -8.88 5.35 -20.14 -0.11 -8.99 16 6 C -0.02 -0.68 5.27 29.85 0.16 -0.52 16 7 C 0.00 0.10 4.02 29.85 0.12 0.22 16 8 C -0.53 -30.79 9.66 25.60 0.25 -30.54 16 9 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 10 C 0.01 0.43 5.47 84.66 0.46 0.89 16 11 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 12 Si 0.95 45.65 27.47 68.60 1.88 47.54 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 15 H -0.25 -11.76 6.54 99.48 0.65 -11.11 16 16 C 0.06 2.12 7.22 43.10 0.31 2.43 16 17 C -0.07 -2.18 10.21 71.23 0.73 -1.45 16 18 N -0.33 -10.97 12.42 -47.39 -0.59 -11.56 16 19 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 20 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 22 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.12 1.39 8.07 -2.38 -0.02 1.37 16 24 H 0.20 4.50 8.06 -2.91 -0.02 4.47 16 25 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 27 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 28 H 0.01 0.58 6.94 -2.39 -0.02 0.56 16 29 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.34 7.70 -2.39 -0.02 2.32 16 Total: -1.00 -71.67 273.89 5.55 -66.12 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.02 Total: 4.39 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 4.22 Total: -34.62 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.57 Total: -83.42 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.54 kcal Total: -71.67 5.55 -66.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.132 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds