Wall clock time and date at job start Mon Mar 30 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47504 * 2 1 4 4 N 1.28469 * 124.86454 * 90.02021 * 3 2 1 5 5 C 1.32754 * 109.93327 * 180.02562 * 4 3 2 6 6 C 1.41431 * 126.56856 * 179.74034 * 5 4 3 7 7 H 1.08003 * 119.99913 * 180.02562 * 6 5 4 8 8 C 1.39851 * 119.99974 * 0.02695 * 6 5 4 9 9 N 1.30900 * 120.00074 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00019 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47547 * 59.99542 * 10 8 6 12 12 H 1.48507 * 109.47331 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46884 * 299.99369 * 10 8 6 14 14 C 1.42225 * 106.86496 * 0.02562 * 5 4 3 15 15 C 1.35073 * 105.54925 * 359.97438 * 14 5 4 16 16 C 1.50700 * 126.31320 * 180.02562 * 15 14 5 17 17 C 1.52994 * 109.47277 * 324.97786 * 16 15 14 18 18 C 1.52996 * 109.47109 * 84.97765 * 16 15 14 19 19 H 1.09001 * 109.46398 * 300.00522 * 1 2 3 20 20 H 1.08999 * 109.46955 * 59.99608 * 1 2 3 21 21 H 1.08992 * 109.47078 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47034 * 239.99833 * 2 1 3 23 23 H 1.09006 * 109.46872 * 119.99999 * 2 1 3 24 24 H 0.96998 * 119.99615 * 180.02562 * 9 8 6 25 25 H 1.08001 * 127.23219 * 179.97438 * 14 5 4 26 26 H 1.08999 * 109.47016 * 204.98013 * 16 15 14 27 27 H 1.09004 * 109.47306 * 299.99669 * 17 16 15 28 28 H 1.09003 * 109.47549 * 59.99849 * 17 16 15 29 29 H 1.08996 * 109.47266 * 179.97438 * 17 16 15 30 30 H 1.09002 * 109.47054 * 59.99721 * 18 16 15 31 31 H 1.08996 * 109.47715 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.47139 * 300.00490 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 7 2.2637 2.0734 1.0541 5 6 2.6907 3.2829 0.7120 6 6 3.0550 4.3281 1.5925 7 1 3.3895 5.2757 1.1966 8 6 2.9819 4.1347 2.9756 9 7 2.5760 2.9864 3.4554 10 14 3.4624 5.5154 4.1384 11 1 2.5920 6.6935 3.8945 12 1 3.2968 5.0604 5.5424 13 1 4.8799 5.8900 3.9030 14 6 2.7053 3.3287 -0.7094 15 6 2.2762 2.1139 -1.1152 16 6 2.1135 1.6555 -2.5415 17 6 1.6498 2.8303 -3.4050 18 6 3.4532 1.1348 -3.0658 19 1 -0.3632 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 2.5250 2.8524 4.4147 25 1 2.9979 4.1601 -1.3335 26 1 1.3717 0.8580 -2.5845 27 1 0.6953 3.2012 -3.0315 28 1 2.3915 3.6279 -3.3621 29 1 1.5325 2.4988 -4.4367 30 1 3.7836 0.2978 -2.4506 31 1 3.3355 0.8028 -4.0973 32 1 4.1949 1.9323 -3.0228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:24 Heat of formation + Delta-G solvation = 54.123198 kcal Electronic energy + Delta-G solvation = -13844.737569 eV Core-core repulsion = 11613.394559 eV Total energy + Delta-G solvation = -2231.343011 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47068 -34.98159 -33.83648 -32.47833 -28.85838 -27.80902 -26.78272 -25.48948 -22.60693 -21.40171 -19.57926 -18.38581 -16.31967 -15.62035 -14.51503 -14.29728 -14.06818 -13.64988 -13.12626 -12.71555 -12.52781 -12.26760 -11.78616 -11.57352 -11.42717 -11.29460 -10.97837 -10.80058 -10.72495 -10.67071 -10.37209 -10.12629 -9.67911 -9.02705 -8.20415 -7.29760 -7.12091 -6.14282 -3.98843 3.25381 3.30228 3.33598 3.57698 4.13773 4.31499 4.55111 5.25682 5.33934 5.35573 5.53710 5.67609 5.75069 5.88785 5.92690 5.93197 6.02517 6.16545 6.21295 6.23587 6.35635 6.55660 6.59186 6.62856 6.92676 7.43722 7.54359 7.60517 7.99724 8.51076 8.84764 9.17246 9.42732 10.48718 10.84354 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.038186 B = 0.009751 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.079455 B = 2870.742523 C = 3353.464255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 N -0.330 5.330 4 N -0.325 5.325 5 C 0.188 3.812 6 C -0.450 4.450 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.786 5.786 10 Si 0.901 3.099 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.271 1.271 14 C -0.282 4.282 15 C -0.011 4.011 16 C -0.019 4.019 17 C -0.134 4.134 18 C -0.138 4.138 19 H 0.065 0.935 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.265 0.735 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -4.498 -8.819 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.114 5.114 4 N -0.157 5.157 5 C 0.038 3.962 6 C -0.489 4.489 7 H 0.093 0.907 8 C -0.145 4.145 9 N -0.415 5.415 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.313 4.313 15 C -0.136 4.136 16 C -0.039 4.039 17 C -0.192 4.192 18 C -0.196 4.196 19 H 0.084 0.916 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.136 0.864 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.256 -5.511 -7.699 9.733 hybrid contribution 0.382 1.142 -0.047 1.206 sum -1.874 -4.368 -7.746 9.088 Atomic orbital electron populations 1.22144 0.95810 1.01402 1.02933 1.21243 0.94283 0.80901 1.02407 1.45487 1.51535 1.11036 1.03378 1.74715 1.27473 1.06079 1.07391 1.19267 0.95868 0.91372 0.89657 1.18450 1.42919 0.97950 0.89621 0.90725 1.25712 0.94235 0.95718 0.98819 1.69974 1.35976 1.22529 1.13046 0.86522 0.79573 0.82048 0.79166 1.19594 1.20929 1.19581 1.21297 1.16878 0.97059 0.96109 1.20878 1.09647 0.94223 0.88844 1.19438 0.96874 0.97354 0.90207 1.21730 1.01637 0.98082 0.97751 1.21800 0.97322 1.01079 0.99365 0.91578 0.92770 0.91985 0.91059 0.89844 0.92430 0.86401 0.91947 0.92710 0.92189 0.93323 0.93249 0.93199 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.13 2.47 6.59 -4.04 -0.03 2.44 16 3 N -0.33 -7.87 3.32 -56.97 -0.19 -8.06 16 4 N -0.33 -9.38 10.24 32.34 0.33 -9.05 16 5 C 0.19 5.51 6.78 -84.72 -0.57 4.94 16 6 C -0.45 -13.27 9.42 -37.76 -0.36 -13.62 16 7 H 0.07 2.08 7.84 -52.48 -0.41 1.67 16 8 C 0.07 2.05 5.49 -17.35 -0.10 1.95 16 9 N -0.79 -23.27 11.97 55.54 0.67 -22.61 16 10 Si 0.90 20.84 29.56 -169.99 -5.02 15.82 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C -0.28 -7.13 10.12 -39.18 -0.40 -7.52 16 15 C -0.01 -0.24 5.85 -81.91 -0.48 -0.72 16 16 C -0.02 -0.31 2.90 -91.78 -0.27 -0.57 16 17 C -0.13 -1.99 8.78 37.15 0.33 -1.66 16 18 C -0.14 -2.03 9.17 37.16 0.34 -1.69 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.07 1.09 7.46 -51.93 -0.39 0.70 16 23 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 24 H 0.27 7.26 8.30 -40.82 -0.34 6.92 16 25 H 0.12 2.74 7.46 -52.49 -0.39 2.35 16 26 H 0.06 0.96 7.44 -51.93 -0.39 0.57 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.91 7.34 -51.93 -0.38 0.53 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 270.87 15.07 4.08 4.08 Total: -1.00 -32.86 270.87 -6.18 -39.04 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.90 Total: -0.49 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.15 Total: -18.72 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.81 Total: -39.72 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.86 -6.18 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.160 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds