Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.30500 * 125.65086 * 265.02886 * 4 2 1 6 6 C 1.34127 * 109.25541 * 179.97438 * 5 4 2 7 7 C 1.50700 * 125.98810 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46983 * 25.02407 * 7 6 5 9 9 C 1.53002 * 109.47042 * 145.02523 * 7 6 5 10 10 C 1.50699 * 109.47369 * 265.02553 * 7 6 5 11 11 H 1.07998 * 119.99783 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00085 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99846 * 179.97438 * 12 10 7 14 14 Si 1.86799 * 120.00095 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.46659 * 90.00231 * 14 12 10 16 16 H 1.48501 * 109.47026 * 210.00179 * 14 12 10 17 17 H 1.48500 * 109.47014 * 330.00237 * 14 12 10 18 18 C 1.34671 * 108.02157 * 359.97438 * 6 5 4 19 19 N 1.35047 * 125.65056 * 84.71687 * 4 2 1 20 20 H 0.96997 * 126.39473 * 0.02562 * 19 4 2 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 23 23 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.46849 * 180.02562 * 9 7 6 29 29 H 1.09003 * 109.46774 * 299.99801 * 9 7 6 30 30 H 1.08997 * 109.47327 * 60.00095 * 9 7 6 31 31 H 0.96993 * 119.99897 * 179.97438 * 13 12 10 32 32 H 1.07995 * 126.58868 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.3725 -1.9685 -1.2969 6 6 2.7699 -2.2540 -2.5457 7 6 3.2432 -3.5969 -3.0392 8 1 2.8205 -4.3833 -2.4140 9 6 2.7900 -3.7971 -4.4867 10 6 4.7476 -3.6554 -2.9712 11 1 5.3051 -2.8050 -2.6075 12 6 5.4121 -4.7942 -3.3744 13 7 6.7250 -4.8450 -3.3155 14 14 4.4478 -6.2649 -4.0042 15 1 4.2704 -6.1477 -5.4739 16 1 5.1895 -7.5132 -3.6930 17 1 3.1170 -6.3026 -3.3463 18 6 2.6718 -1.1302 -3.2813 19 7 2.1994 -0.1519 -2.4487 20 1 2.0200 0.7707 -2.6884 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 3.1320 -4.7686 -4.8435 29 1 1.7019 -3.7548 -4.5358 30 1 3.2127 -3.0107 -5.1119 31 1 7.1925 -5.6463 -3.5988 32 1 2.9160 -1.0224 -4.3278 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = 18.080997 kcal Electronic energy + Delta-G solvation = -13590.359258 eV Core-core repulsion = 11357.453341 eV Total energy + Delta-G solvation = -2232.905918 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.93169 -36.95652 -35.74565 -33.73444 -32.86031 -28.89226 -28.02048 -27.09824 -24.10176 -23.71853 -21.09303 -20.17094 -18.76028 -18.47338 -16.70948 -16.13470 -15.65036 -15.14866 -14.90143 -14.71049 -14.57093 -14.03574 -13.77911 -13.14823 -12.98870 -12.82113 -12.54223 -12.20338 -12.10361 -11.97577 -11.84681 -11.36869 -11.33589 -10.75464 -10.69693 -10.58161 -9.00249 -8.27339 -6.30762 1.27153 1.31605 1.39751 1.50862 2.33330 2.35491 2.37977 3.07233 3.44369 3.98327 4.20667 4.22456 4.39450 4.51978 4.68116 4.74475 4.77004 4.84856 4.92703 4.94464 5.02468 5.10234 5.18100 5.31858 5.34594 5.37949 5.67026 5.68639 5.93840 6.35443 6.73242 6.75512 7.32609 7.39521 8.90069 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.054336 B = 0.007894 C = 0.007663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.189942 B = 3546.280617 C = 3653.056148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.010 4.010 3 C -0.144 4.144 4 C 0.205 3.795 5 N -0.541 5.541 6 C 0.014 3.986 7 C 0.082 3.918 8 H 0.016 0.984 9 C -0.135 4.135 10 C -0.503 4.503 11 H 0.020 0.980 12 C 0.010 3.990 13 N -0.952 5.952 14 Si 0.956 3.044 15 H -0.255 1.255 16 H -0.298 1.298 17 H -0.255 1.255 18 C -0.060 4.060 19 N -0.553 5.553 20 H 0.431 0.569 21 H 0.042 0.958 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.266 0.734 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 12.489 1.697 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.060 4.060 5 N -0.262 5.262 6 C -0.114 4.114 7 C 0.062 3.938 8 H 0.035 0.965 9 C -0.192 4.192 10 C -0.542 4.542 11 H 0.039 0.961 12 C -0.186 4.186 13 N -0.593 5.593 14 Si 0.782 3.218 15 H -0.181 1.181 16 H -0.225 1.225 17 H -0.179 1.179 18 C -0.192 4.192 19 N -0.159 5.159 20 H 0.272 0.728 21 H 0.061 0.939 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.039 11.803 2.290 18.484 hybrid contribution 0.491 -0.074 -0.975 1.094 sum -13.548 11.729 1.315 17.968 Atomic orbital electron populations 1.21782 0.92008 1.01936 1.03519 1.19739 0.97112 0.95736 0.90441 1.21859 1.00848 0.93203 1.04217 1.23819 1.03436 0.89608 0.89105 1.70034 1.19400 1.14655 1.22110 1.20867 1.03304 0.97223 0.89975 1.17450 0.93432 0.89465 0.93485 0.96547 1.22009 0.99849 1.00481 0.96910 1.21095 0.90843 1.00192 1.42031 0.96122 1.25887 0.95635 1.01452 0.95620 1.70051 1.09023 1.30009 1.50192 0.85746 0.78931 0.77472 0.79629 1.18050 1.22549 1.17902 1.22571 1.09352 0.88668 0.98654 1.42900 1.51272 1.12745 1.08979 0.72793 0.93924 0.89082 0.91893 0.89483 0.88877 0.93528 0.91189 0.94679 0.92137 0.91725 0.92484 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.18 71.98 0.66 -1.83 16 2 C -0.01 -0.23 3.39 -11.54 -0.04 -0.27 16 3 C -0.14 -2.37 8.94 71.98 0.64 -1.73 16 4 C 0.21 6.96 6.87 138.13 0.95 7.91 16 5 N -0.54 -24.72 11.25 -176.28 -1.98 -26.71 16 6 C 0.01 0.66 5.96 41.39 0.25 0.90 16 7 C 0.08 4.22 2.35 -12.29 -0.03 4.19 16 8 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 9 C -0.14 -5.79 8.25 71.98 0.59 -5.20 16 10 C -0.50 -30.94 9.13 25.60 0.23 -30.70 16 11 H 0.02 1.42 7.98 -2.91 -0.02 1.40 16 12 C 0.01 0.63 5.45 84.65 0.46 1.09 16 13 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 14 Si 0.96 46.99 24.37 68.60 1.67 48.67 16 15 H -0.26 -11.48 6.87 99.48 0.68 -10.80 16 16 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 17 H -0.25 -12.01 6.53 99.48 0.65 -11.36 16 18 C -0.06 -2.21 11.18 83.09 0.93 -1.28 16 19 N -0.55 -16.19 5.91 -186.27 -1.10 -17.29 16 20 H 0.43 8.40 8.16 -92.71 -0.76 7.64 16 21 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.89 7.42 -2.39 -0.02 0.88 16 28 H 0.03 1.53 3.27 -2.39 -0.01 1.52 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.57 7.28 -2.39 -0.02 2.55 16 31 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 32 H 0.19 6.06 7.38 -2.91 -0.02 6.04 16 Total: -1.00 -77.90 260.68 3.81 -74.09 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.27 Total: 9.82 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.65 Total: -26.93 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -2.79 Total: -105.65 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.67 Total: 48.67 kcal Total: -77.90 3.81 -74.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.172 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds