Wall clock time and date at job start Mon Mar 30 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 115.55012 * 2 1 4 4 C 1.34857 * 125.37981 * 34.32860 * 3 2 1 5 5 N 1.30454 * 115.79351 * 179.97438 * 4 3 2 6 6 C 1.31868 * 115.69126 * 0.02562 * 5 4 3 7 7 C 1.39907 * 125.55810 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99980 * 180.02562 * 7 6 5 9 9 C 1.40245 * 119.99887 * 0.02562 * 7 6 5 10 10 N 1.30702 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00138 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46960 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46951 * 120.00192 * 11 9 7 14 14 H 1.48497 * 109.47301 * 240.00082 * 11 9 7 15 15 S 1.71036 * 125.38248 * 214.30521 * 3 2 1 16 16 C 1.53001 * 117.52069 * 145.70144 * 2 1 3 17 17 C 1.52998 * 117.49724 * 214.33129 * 2 1 3 18 18 H 1.09003 * 109.47278 * 85.58046 * 1 2 3 19 19 H 1.09005 * 109.47166 * 205.58023 * 1 2 3 20 20 H 1.09002 * 109.47672 * 325.58146 * 1 2 3 21 21 H 1.08001 * 122.10737 * 359.96124 * 4 3 2 22 22 H 0.96992 * 120.00378 * 179.97438 * 10 9 7 23 23 H 1.08996 * 117.49901 * 214.97178 * 16 2 1 24 24 H 1.09000 * 117.49298 * 359.97438 * 16 2 1 25 25 H 1.09001 * 117.50230 * 359.97438 * 17 2 1 26 26 H 1.09003 * 117.49909 * 144.99882 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 1.6975 2.4557 0.6201 5 7 2.4144 3.5387 0.4980 6 6 3.5161 3.4175 -0.2165 7 6 4.4322 4.4418 -0.4793 8 1 5.3083 4.2421 -1.0785 9 6 4.2129 5.7278 0.0353 10 7 3.1529 5.9694 0.7609 11 14 5.4364 7.0953 -0.3149 12 1 6.5426 6.5670 -1.1530 13 1 4.7526 8.1984 -1.0364 14 1 5.9863 7.6075 0.9659 15 16 3.6463 1.7563 -0.7859 16 6 2.2370 -1.1209 0.7646 17 6 2.2364 -1.1207 -0.7654 18 1 -0.3634 0.0792 -1.0246 19 1 -0.3634 -0.9270 0.4437 20 1 -0.3634 0.8477 0.5809 21 1 0.7755 2.4381 1.1822 22 1 3.0014 6.8587 1.1171 23 1 3.1721 -0.8750 1.2676 24 1 1.6120 -1.8584 1.2682 25 1 1.6112 -1.8583 -1.2686 26 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319342.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:08 Heat of formation + Delta-G solvation = 28.733868 kcal Electronic energy + Delta-G solvation = -11261.777992 eV Core-core repulsion = 9238.535132 eV Total energy + Delta-G solvation = -2023.242860 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.76495 -38.31375 -35.53540 -31.18016 -29.51902 -27.85562 -24.70290 -23.30249 -21.82267 -20.50139 -18.21818 -18.02906 -16.68931 -16.36306 -15.10195 -14.80550 -14.58732 -14.45352 -13.88711 -13.38195 -13.20139 -12.93589 -12.76263 -12.40047 -12.23619 -11.89350 -11.82517 -11.43984 -11.13292 -10.76607 -9.60273 -9.52459 -9.29758 -8.57175 -6.57620 0.59602 1.28393 1.44298 1.50643 1.61473 1.76274 2.19314 2.49549 3.07735 3.31143 3.91709 4.00049 4.19263 4.33026 4.43989 4.75406 4.90149 4.94912 5.00461 5.02748 5.19450 5.30390 5.36435 5.46045 5.71113 6.05085 6.31767 6.61495 8.00143 8.25266 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.071259 B = 0.008636 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.837024 B = 3241.289561 C = 3510.686605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.038 4.038 3 C -0.342 4.342 4 C 0.073 3.927 5 N -0.575 5.575 6 C 0.192 3.808 7 C -0.412 4.412 8 H 0.105 0.895 9 C 0.025 3.975 10 N -0.749 5.749 11 Si 1.006 2.994 12 H -0.247 1.247 13 H -0.262 1.262 14 H -0.262 1.262 15 S -0.078 6.078 16 C -0.168 4.168 17 C -0.172 4.172 18 H 0.058 0.942 19 H 0.081 0.919 20 H 0.050 0.950 21 H 0.141 0.859 22 H 0.291 0.709 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 -5.431 -1.458 5.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.041 4.041 3 C -0.465 4.465 4 C -0.085 4.085 5 N -0.295 5.295 6 C -0.059 4.059 7 C -0.455 4.455 8 H 0.123 0.877 9 C -0.201 4.201 10 N -0.371 5.371 11 Si 0.824 3.176 12 H -0.170 1.170 13 H -0.186 1.186 14 H -0.186 1.186 15 S 0.179 5.821 16 C -0.205 4.205 17 C -0.210 4.210 18 H 0.077 0.923 19 H 0.100 0.900 20 H 0.069 0.931 21 H 0.159 0.841 22 H 0.102 0.898 23 H 0.089 0.911 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.096 -5.383 -1.715 5.651 hybrid contribution -0.458 0.585 0.526 0.910 sum -0.362 -4.798 -1.189 4.957 Atomic orbital electron populations 1.21264 0.90300 1.02321 1.01843 1.19226 0.94376 0.84977 1.05518 1.23413 1.04027 1.00144 1.18952 1.21656 0.99854 0.88092 0.98915 1.67673 1.08196 1.26975 1.26648 1.24617 0.94741 0.92561 0.94001 1.19553 1.05769 0.93041 1.27101 0.87673 1.27224 0.98071 1.01874 0.92916 1.70097 1.23986 1.23521 1.19527 0.84809 0.77585 0.75725 0.79518 1.16967 1.18608 1.18629 1.82748 1.26202 1.13435 1.59703 1.23156 1.02233 1.01069 0.94083 1.23076 1.02075 1.01262 0.94577 0.92307 0.90038 0.93075 0.84136 0.89818 0.91091 0.86325 0.86397 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.00 9.77 71.98 0.70 -2.30 15 2 C -0.04 -1.41 2.61 -52.93 -0.14 -1.55 15 3 C -0.34 -16.11 5.86 24.91 0.15 -15.96 15 4 C 0.07 3.77 10.65 84.12 0.90 4.67 15 5 N -0.57 -33.61 8.76 -195.56 -1.71 -35.32 15 6 C 0.19 10.85 7.07 85.09 0.60 11.45 15 7 C -0.41 -21.90 9.40 23.16 0.22 -21.69 15 8 H 0.11 5.12 7.85 -2.91 -0.02 5.10 15 9 C 0.03 1.24 5.50 85.35 0.47 1.71 15 10 N -0.75 -39.96 11.87 21.88 0.26 -39.70 15 11 Si 1.01 35.90 29.56 68.60 2.03 37.93 15 12 H -0.25 -8.32 7.11 99.48 0.71 -7.61 15 13 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 14 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 15 S -0.08 -3.84 21.90 -56.49 -1.24 -5.08 15 16 C -0.17 -5.34 9.88 30.60 0.30 -5.04 15 17 C -0.17 -5.51 9.75 30.59 0.30 -5.21 15 18 H 0.06 1.70 8.14 -2.39 -0.02 1.69 15 19 H 0.08 1.93 7.90 -2.38 -0.02 1.91 15 20 H 0.05 1.63 6.71 -2.39 -0.02 1.61 15 21 H 0.14 6.66 7.06 -2.91 -0.02 6.64 15 22 H 0.29 13.72 8.29 -92.71 -0.77 12.95 15 23 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.12 2.98 8.05 -2.39 -0.02 2.96 15 25 H 0.12 3.02 8.14 -2.39 -0.02 3.00 15 26 H 0.07 2.64 7.22 -2.39 -0.02 2.62 15 Total: -1.00 -63.21 241.41 4.01 -59.20 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.18 Total: 16.88 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 3.50 Total: -33.91 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -1.45 Total: -75.02 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.24 Total: -5.08 kcal Total: -63.21 4.01 -59.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319342.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.930 kcal (2) G-P(sol) polarization free energy of solvation -63.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds