Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52455 * 109.46947 * 179.97438 * 9 7 2 11 11 C 1.52738 * 110.97556 * 295.20577 * 10 9 7 12 12 C 1.52271 * 110.75877 * 298.63713 * 11 10 9 13 13 C 1.52280 * 112.23173 * 303.57427 * 12 11 10 14 14 C 1.52163 * 112.38626 * 49.58149 * 13 12 11 15 15 C 1.52045 * 112.85173 * 311.41467 * 14 13 12 16 16 C 1.52517 * 111.38889 * 292.17204 * 15 14 13 17 17 C 1.51923 * 112.81520 * 67.92468 * 16 15 14 18 18 C 1.51885 * 113.81140 * 46.08011 * 17 16 15 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09607 * 108.97699 * 55.00461 * 10 9 7 23 23 H 1.10163 * 108.03521 * 57.13432 * 11 10 9 24 24 H 1.10036 * 108.56975 * 183.55431 * 12 11 10 25 25 H 1.09172 * 110.36629 * 66.39426 * 12 11 10 26 26 H 1.08340 * 111.21285 * 283.92433 * 13 12 11 27 27 H 1.10718 * 107.62779 * 168.02622 * 13 12 11 28 28 H 1.10074 * 108.57707 * 190.87073 * 14 13 12 29 29 H 1.09404 * 109.55584 * 74.49552 * 14 13 12 30 30 H 1.10143 * 108.48352 * 173.16175 * 15 14 13 31 31 H 1.09689 * 108.86204 * 189.40769 * 16 15 14 32 32 H 1.09672 * 108.90241 * 306.37878 * 16 15 14 33 33 H 1.08708 * 111.01672 * 279.80589 * 17 16 15 34 34 H 1.10978 * 107.50062 * 165.05538 * 17 16 15 35 35 H 1.09746 * 109.21756 * 193.10450 * 18 17 16 36 36 H 1.09801 * 109.13653 * 76.11908 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2416 -3.6580 0.0005 11 6 3.0586 -3.6789 -1.2898 12 6 2.1528 -3.8691 -2.4990 13 6 1.3074 -5.1312 -2.3927 14 6 0.5931 -5.2392 -1.0535 15 6 1.5166 -4.9955 0.1295 16 6 2.5448 -6.1129 0.2720 17 6 3.5529 -6.1343 -0.8643 18 6 4.1206 -4.7676 -1.2062 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.9251 -3.5426 0.8496 23 1 3.5670 -2.7065 -1.3874 24 1 2.7811 -3.9429 -3.3993 25 1 1.5050 -3.0000 -2.6290 26 1 1.8970 -6.0165 -2.5986 27 1 0.5345 -5.0846 -3.1841 28 1 0.1656 -6.2496 -0.9646 29 1 -0.2449 -4.5364 -1.0277 30 1 0.9084 -4.9680 1.0474 31 1 3.0748 -5.9879 1.2242 32 1 2.0204 -7.0755 0.3097 33 1 3.1376 -6.6176 -1.7450 34 1 4.3995 -6.7781 -0.5473 35 1 4.6476 -4.8254 -2.1671 36 1 4.8599 -4.4843 -0.4454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261322703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = -46.733341 kcal Electronic energy + Delta-G solvation = -14706.925779 eV Core-core repulsion = 12574.749645 eV Total energy + Delta-G solvation = -2132.176135 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73194 -33.33187 -32.39737 -31.94803 -30.84013 -26.66579 -25.58482 -23.40100 -21.07965 -20.61002 -20.00434 -16.95931 -16.17274 -15.29932 -14.41175 -14.28797 -13.61313 -13.43843 -12.88030 -12.77272 -12.33855 -12.20977 -11.73958 -11.50125 -11.11340 -10.92276 -10.88182 -10.54043 -10.44437 -10.31971 -10.18119 -9.93444 -9.49859 -9.38182 -8.97556 -8.70620 -8.61674 -8.24513 -5.92659 -3.92977 3.34048 3.41870 3.45677 4.51461 5.10779 5.18624 5.24520 5.42880 5.43581 5.66836 5.69546 5.78366 5.90714 5.94945 6.05681 6.23424 6.25365 6.29185 6.39803 6.42057 6.45884 6.53323 6.59525 6.64014 6.72320 6.84102 7.01699 7.09220 7.19684 7.24664 7.42263 7.80512 7.97513 8.10926 8.54143 9.14290 9.69965 11.18676 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.043359 B = 0.009813 C = 0.009358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.610301 B = 2852.750962 C = 2991.436271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.066 4.066 11 C -0.071 4.071 12 C -0.102 4.102 13 C -0.109 4.109 14 C -0.100 4.100 15 C -0.080 4.080 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.107 4.107 19 H 0.258 0.742 20 H 0.011 0.989 21 H 0.022 0.978 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 -10.726 -2.765 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.084 4.084 11 C -0.090 4.090 12 C -0.139 4.139 13 C -0.147 4.147 14 C -0.138 4.138 15 C -0.099 4.099 16 C -0.142 4.142 17 C -0.146 4.146 18 C -0.144 4.144 19 H 0.067 0.933 20 H 0.030 0.970 21 H 0.041 0.959 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.305 -10.623 -2.768 11.792 hybrid contribution 0.429 0.977 0.022 1.067 sum 4.734 -9.646 -2.746 11.091 Atomic orbital electron populations 1.69976 1.05962 1.26182 1.51520 1.24999 0.94766 0.98998 0.95723 0.86642 0.80205 0.84326 0.77469 1.19817 1.21173 1.21179 1.21309 0.92933 0.91064 1.49494 0.92738 1.19027 0.93773 0.90893 0.97173 1.21012 0.97578 0.94012 0.95800 1.20732 0.95169 0.97623 0.95436 1.21209 0.98085 0.97855 0.96746 1.21299 0.98546 0.98166 0.96654 1.21154 0.98086 1.00203 0.94348 1.20882 0.95784 0.95697 0.97492 1.21312 0.96899 0.98144 0.97854 1.21225 0.97847 0.96854 0.98647 1.21318 0.97949 0.94897 1.00259 0.93268 0.97029 0.95943 0.93117 0.90927 0.94152 0.91064 0.92450 0.94219 0.94024 0.91823 0.92455 0.93000 0.93356 0.92136 0.94457 0.93353 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.51 -14.24 8.40 -34.44 -0.29 -14.53 16 8 H 0.05 1.50 7.04 -52.49 -0.37 1.13 16 9 C 0.03 0.72 4.00 -28.16 -0.11 0.61 16 10 C -0.07 -1.35 1.63 -91.20 -0.15 -1.50 16 11 C -0.07 -1.34 2.27 -91.47 -0.21 -1.55 16 12 C -0.10 -1.82 4.88 -27.47 -0.13 -1.95 16 13 C -0.11 -1.75 5.09 -27.53 -0.14 -1.89 16 14 C -0.10 -1.69 4.83 -27.64 -0.13 -1.82 16 15 C -0.08 -1.41 2.36 -91.52 -0.22 -1.63 16 16 C -0.10 -1.56 5.30 -27.53 -0.15 -1.71 16 17 C -0.11 -1.54 4.96 -27.84 -0.14 -1.68 16 18 C -0.11 -1.67 5.29 -27.64 -0.15 -1.82 16 19 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 20 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 21 H 0.02 0.60 5.75 -51.93 -0.30 0.30 16 22 H 0.05 1.09 8.18 -51.59 -0.42 0.66 16 23 H 0.07 1.52 6.93 -51.27 -0.36 1.17 16 24 H 0.04 0.65 8.23 -51.34 -0.42 0.23 16 25 H 0.07 1.47 6.99 -51.83 -0.36 1.10 16 26 H 0.06 0.83 5.50 -52.30 -0.29 0.54 16 27 H 0.04 0.60 8.28 -50.94 -0.42 0.18 16 28 H 0.04 0.61 8.23 -51.32 -0.42 0.19 16 29 H 0.06 1.18 7.40 -51.70 -0.38 0.80 16 30 H 0.06 1.04 8.24 -51.28 -0.42 0.62 16 31 H 0.05 0.76 8.20 -51.54 -0.42 0.34 16 32 H 0.05 0.65 8.20 -51.55 -0.42 0.23 16 33 H 0.06 0.82 5.68 -52.09 -0.30 0.52 16 34 H 0.04 0.47 8.30 -50.79 -0.42 0.05 16 35 H 0.05 0.69 8.20 -51.51 -0.42 0.27 16 36 H 0.05 0.79 8.21 -51.47 -0.42 0.37 16 LS Contribution 262.61 15.07 3.96 3.96 Total: -1.00 -28.91 262.61 -8.37 -37.27 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -6.13 Total: -3.79 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -1.91 Total: -27.97 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.91 -8.37 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.460 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds