Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52455 * 109.46947 * 179.97438 * 9 7 2 11 11 C 1.52738 * 110.97556 * 295.20577 * 10 9 7 12 12 C 1.52271 * 110.75877 * 298.63713 * 11 10 9 13 13 C 1.52280 * 112.23173 * 303.57427 * 12 11 10 14 14 C 1.52163 * 112.38626 * 49.58149 * 13 12 11 15 15 C 1.52045 * 112.85173 * 311.41467 * 14 13 12 16 16 C 1.52517 * 111.38889 * 292.17204 * 15 14 13 17 17 C 1.51923 * 112.81520 * 67.92468 * 16 15 14 18 18 C 1.51885 * 113.81140 * 46.08011 * 17 16 15 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09607 * 108.97699 * 55.00461 * 10 9 7 23 23 H 1.10163 * 108.03521 * 57.13432 * 11 10 9 24 24 H 1.10036 * 108.56975 * 183.55431 * 12 11 10 25 25 H 1.09172 * 110.36629 * 66.39426 * 12 11 10 26 26 H 1.08340 * 111.21285 * 283.92433 * 13 12 11 27 27 H 1.10718 * 107.62779 * 168.02622 * 13 12 11 28 28 H 1.10074 * 108.57707 * 190.87073 * 14 13 12 29 29 H 1.09404 * 109.55584 * 74.49552 * 14 13 12 30 30 H 1.10143 * 108.48352 * 173.16175 * 15 14 13 31 31 H 1.09689 * 108.86204 * 189.40769 * 16 15 14 32 32 H 1.09672 * 108.90241 * 306.37878 * 16 15 14 33 33 H 1.08708 * 111.01672 * 279.80589 * 17 16 15 34 34 H 1.10978 * 107.50062 * 165.05538 * 17 16 15 35 35 H 1.09746 * 109.21756 * 193.10450 * 18 17 16 36 36 H 1.09801 * 109.13653 * 76.11908 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2416 -3.6580 0.0005 11 6 3.0586 -3.6789 -1.2898 12 6 2.1528 -3.8691 -2.4990 13 6 1.3074 -5.1312 -2.3927 14 6 0.5931 -5.2392 -1.0535 15 6 1.5166 -4.9955 0.1295 16 6 2.5448 -6.1129 0.2720 17 6 3.5529 -6.1343 -0.8643 18 6 4.1206 -4.7676 -1.2062 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.9251 -3.5426 0.8496 23 1 3.5670 -2.7065 -1.3874 24 1 2.7811 -3.9429 -3.3993 25 1 1.5050 -3.0000 -2.6290 26 1 1.8970 -6.0165 -2.5986 27 1 0.5345 -5.0846 -3.1841 28 1 0.1656 -6.2496 -0.9646 29 1 -0.2449 -4.5364 -1.0277 30 1 0.9084 -4.9680 1.0474 31 1 3.0748 -5.9879 1.2242 32 1 2.0204 -7.0755 0.3097 33 1 3.1376 -6.6176 -1.7450 34 1 4.3995 -6.7781 -0.5473 35 1 4.6476 -4.8254 -2.1671 36 1 4.8599 -4.4843 -0.4454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = -61.762927 kcal Electronic energy + Delta-G solvation = -14707.577511 eV Core-core repulsion = 12574.749645 eV Total energy + Delta-G solvation = -2132.827867 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17200 -35.35314 -33.72157 -33.34309 -32.66633 -28.53337 -26.88554 -25.29589 -22.68889 -22.04012 -21.37664 -18.44398 -18.27458 -16.81355 -16.40884 -15.71023 -15.08749 -14.92665 -14.24022 -14.15291 -14.01638 -13.74066 -13.47236 -13.28396 -12.88846 -12.57205 -12.36263 -12.18312 -11.89960 -11.71653 -11.69422 -11.64122 -11.28587 -11.05717 -10.59302 -10.41055 -10.26787 -10.19199 -8.16205 -6.24576 1.37027 1.37373 1.50258 2.41235 3.16619 3.82492 3.86125 3.90002 4.18595 4.37323 4.44142 4.52166 4.54646 4.54821 4.76694 4.78169 4.81715 4.91969 5.10599 5.16337 5.20073 5.22191 5.27076 5.28440 5.31196 5.43539 5.47834 5.51267 5.61826 5.66324 5.73920 5.85747 5.94896 6.02585 6.35218 6.92445 7.42976 8.95730 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.043359 B = 0.009813 C = 0.009358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.610301 B = 2852.750962 C = 2991.436271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.063 4.063 11 C -0.068 4.068 12 C -0.101 4.101 13 C -0.105 4.105 14 C -0.102 4.102 15 C -0.079 4.079 16 C -0.101 4.101 17 C -0.109 4.109 18 C -0.103 4.103 19 H 0.260 0.740 20 H -0.025 1.025 21 H 0.000 1.000 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 -12.511 -3.550 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.563 4.563 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.081 4.081 11 C -0.087 4.087 12 C -0.139 4.139 13 C -0.142 4.142 14 C -0.139 4.139 15 C -0.098 4.098 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.140 4.140 19 H 0.069 0.931 20 H -0.007 1.007 21 H 0.018 0.982 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.022 -12.417 -3.551 14.250 hybrid contribution -0.148 1.562 0.288 1.595 sum 5.874 -10.855 -3.263 12.766 Atomic orbital electron populations 1.70113 1.07669 1.27281 1.52515 1.25908 0.95673 1.02994 0.95295 0.85527 0.79186 0.79462 0.77679 1.18723 1.20492 1.20546 1.21677 0.93151 0.92352 1.49071 0.92676 1.18866 0.94052 0.92744 0.94223 1.20863 0.96592 0.94003 0.96686 1.20676 0.95722 0.97785 0.94509 1.21177 0.97921 0.97502 0.97303 1.21281 0.98772 0.98034 0.96157 1.21156 0.97125 1.00965 0.94676 1.20857 0.96496 0.95082 0.97350 1.21280 0.96370 0.97664 0.98503 1.21209 0.98525 0.95953 0.98913 1.21267 0.96643 0.94611 1.01493 0.93074 1.00660 0.98171 0.94496 0.94183 0.91826 0.95256 0.89288 0.93359 0.90928 0.95157 0.93965 0.92991 0.90741 0.90546 0.91775 0.91294 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.52 -30.56 8.40 25.60 0.22 -30.35 16 8 H 0.06 3.13 7.04 -2.91 -0.02 3.11 16 9 C 0.04 2.07 4.00 29.67 0.12 2.19 16 10 C -0.06 -2.67 1.63 -11.17 -0.02 -2.69 16 11 C -0.07 -2.56 2.27 -11.35 -0.03 -2.59 16 12 C -0.10 -3.59 4.88 30.11 0.15 -3.45 16 13 C -0.11 -3.13 5.09 30.08 0.15 -2.98 16 14 C -0.10 -3.33 4.83 30.00 0.14 -3.18 16 15 C -0.08 -2.76 2.36 -11.37 -0.03 -2.79 16 16 C -0.10 -2.69 5.30 30.08 0.16 -2.53 16 17 C -0.11 -2.60 4.96 29.87 0.15 -2.45 16 18 C -0.10 -2.93 5.29 30.00 0.16 -2.77 16 19 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 20 H -0.02 -1.51 8.14 -2.39 -0.02 -1.53 16 21 H 0.00 0.00 5.75 -2.39 -0.01 -0.01 16 22 H 0.04 1.63 8.18 -2.06 -0.02 1.61 16 23 H 0.04 1.72 6.93 -1.76 -0.01 1.71 16 24 H 0.06 1.93 8.23 -1.83 -0.02 1.92 16 25 H 0.03 1.25 6.99 -2.30 -0.02 1.23 16 26 H 0.09 2.13 5.50 -2.73 -0.02 2.12 16 27 H 0.05 1.36 8.28 -1.46 -0.01 1.35 16 28 H 0.07 1.93 8.23 -1.81 -0.01 1.92 16 29 H 0.03 1.16 7.40 -2.17 -0.02 1.14 16 30 H 0.04 1.56 8.24 -1.77 -0.01 1.55 16 31 H 0.05 1.39 8.20 -2.02 -0.02 1.37 16 32 H 0.07 1.65 8.20 -2.03 -0.02 1.63 16 33 H 0.08 1.61 5.68 -2.54 -0.01 1.60 16 34 H 0.06 1.27 8.30 -1.32 -0.01 1.26 16 35 H 0.07 1.71 8.20 -1.99 -0.02 1.70 16 36 H 0.05 1.41 8.21 -1.96 -0.02 1.39 16 Total: -1.00 -65.05 262.61 5.02 -60.03 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.07 Total: 3.68 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 1.64 Total: -53.22 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.28 Total: -58.17 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -65.05 5.02 -60.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.737 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds