Wall clock time and date at job start Mon Mar 30 2020 02:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54137 * 1 3 3 C 1.52088 * 108.39285 * 2 1 4 4 C 1.52069 * 113.34725 * 167.61505 * 3 2 1 5 5 H 1.09390 * 109.55595 * 126.18925 * 4 3 2 6 6 C 1.53660 * 109.01766 * 244.77163 * 4 3 2 7 7 C 1.52829 * 109.62589 * 62.19344 * 6 4 3 8 8 C 1.52833 * 110.57942 * 57.87374 * 7 6 4 9 9 C 1.53666 * 109.61248 * 302.10504 * 8 7 6 10 10 H 1.09389 * 108.48556 * 178.57200 * 9 8 7 11 11 C 1.52061 * 109.04524 * 297.83947 * 9 8 7 12 12 C 1.52410 * 112.33506 * 4.48196 * 4 3 2 13 13 C 1.49650 * 112.43975 * 69.03876 * 12 4 3 14 14 H 1.08000 * 120.00532 * 243.56789 * 13 12 4 15 15 C 1.37884 * 119.99816 * 63.56702 * 13 12 4 16 16 N 1.31511 * 120.00091 * 9.67259 * 15 13 12 17 17 Si 1.86806 * 119.99584 * 189.67453 * 15 13 12 18 18 H 1.48494 * 109.47279 * 94.99421 * 17 15 13 19 19 H 1.48498 * 109.46649 * 214.98934 * 17 15 13 20 20 H 1.48494 * 109.47271 * 334.98800 * 17 15 13 21 21 H 1.09000 * 109.47561 * 60.00412 * 1 2 3 22 22 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47580 * 299.99400 * 1 2 3 24 24 H 1.09177 * 106.83153 * 241.08187 * 2 1 3 25 25 H 1.09683 * 109.17017 * 45.57701 * 3 2 1 26 26 H 1.09895 * 108.89085 * 288.99962 * 3 2 1 27 27 H 1.08946 * 109.11170 * 302.05512 * 6 4 3 28 28 H 1.08934 * 109.10237 * 182.30646 * 6 4 3 29 29 H 1.09002 * 109.66928 * 296.80641 * 7 6 4 30 30 H 1.09360 * 109.11614 * 177.89645 * 7 6 4 31 31 H 1.08942 * 109.68190 * 182.34175 * 8 7 6 32 32 H 1.08925 * 109.67932 * 61.87227 * 8 7 6 33 33 H 1.09896 * 108.90394 * 236.59465 * 11 9 8 34 34 H 1.09684 * 109.26760 * 353.22332 * 11 9 8 35 35 H 1.10742 * 107.45385 * 187.28274 * 12 4 3 36 36 H 0.97001 * 120.00059 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5414 0.0000 0.0000 3 6 2.0212 1.4432 0.0000 4 6 3.5054 1.5848 0.2995 5 1 3.9849 2.1672 -0.4927 6 6 3.6786 2.3354 1.6290 7 6 3.0483 1.5256 2.7615 8 6 3.6792 0.1361 2.8441 9 6 3.5054 -0.5900 1.5010 10 1 3.9850 -1.5705 1.5722 11 6 2.0213 -0.7682 1.2217 12 6 4.2022 0.2351 0.4254 13 6 4.2884 -0.4874 -0.8823 14 1 3.7783 -1.4303 -1.0130 15 6 5.0192 0.0507 -1.9204 16 7 5.7922 1.0935 -1.7091 17 14 4.9112 -0.7015 -3.6269 18 1 3.8989 0.0322 -4.4281 19 1 6.2343 -0.6065 -4.2943 20 1 4.5146 -2.1281 -3.5148 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8575 -0.5053 -0.9147 25 1 1.4468 2.0138 0.7399 26 1 1.8123 1.8876 -0.9831 27 1 3.1904 3.3067 1.5565 28 1 4.7413 2.4737 1.8245 29 1 1.9755 1.4321 2.5926 30 1 3.2090 2.0488 3.7083 31 1 3.1914 -0.4424 3.6278 32 1 4.7419 0.2283 3.0647 33 1 1.8125 -1.8370 1.0746 34 1 1.4467 -0.4458 2.0986 35 1 5.2366 0.4264 0.7716 36 1 6.3066 1.4718 -2.4393 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:51 Heat of formation + Delta-G solvation = -55.508764 kcal Electronic energy + Delta-G solvation = -15030.749811 eV Core-core repulsion = 12898.193145 eV Total energy + Delta-G solvation = -2132.556666 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.05038 -35.14865 -34.82159 -33.15697 -31.32492 -27.82034 -26.66674 -26.01115 -22.84082 -21.82060 -21.11521 -18.60384 -17.90917 -16.84396 -16.28199 -15.46459 -15.28282 -14.88997 -14.48894 -13.87284 -13.67449 -13.58087 -13.02492 -12.93069 -12.83543 -12.55830 -12.40405 -12.17372 -11.89965 -11.69866 -11.56847 -11.52811 -11.33215 -11.02044 -10.72605 -10.25093 -10.16753 -10.05353 -8.06164 -6.09402 1.38202 1.40491 1.49172 2.45810 3.23531 3.95726 4.08072 4.09166 4.40706 4.41432 4.46078 4.52595 4.69697 4.72558 4.92331 4.96463 4.99270 5.00067 5.05362 5.13436 5.20226 5.24132 5.33441 5.34825 5.40903 5.43767 5.56171 5.59207 5.71153 5.74836 5.88998 5.99334 6.13298 6.25528 6.54004 7.05234 7.53954 9.02293 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.013940 C = 0.011932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.112439 B = 2008.161938 C = 2346.053337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.079 4.079 4 C -0.076 4.076 5 H 0.031 0.969 6 C -0.111 4.111 7 C -0.106 4.106 8 C -0.109 4.109 9 C -0.082 4.082 10 H 0.037 0.963 11 C -0.083 4.083 12 C 0.069 3.931 13 C -0.504 4.504 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.937 3.063 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.267 1.267 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.070 0.930 35 H -0.026 1.026 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -0.316 6.680 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.095 4.095 5 H 0.050 0.950 6 C -0.148 4.148 7 C -0.143 4.143 8 C -0.146 4.146 9 C -0.101 4.101 10 H 0.056 0.944 11 C -0.120 4.120 12 C 0.050 3.950 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.763 3.237 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.192 1.192 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.089 0.911 35 H -0.008 1.008 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.978 -0.205 6.603 11.146 hybrid contribution 0.762 -0.177 -1.423 1.624 sum -8.216 -0.382 5.180 9.720 Atomic orbital electron populations 1.22129 0.94561 1.01635 1.01626 1.20720 0.95007 0.95612 0.98432 1.21134 0.95093 0.96255 0.99173 1.20830 0.95111 0.98054 0.95500 0.95049 1.21716 0.98989 0.98179 0.95949 1.21419 1.00382 0.95066 0.97426 1.21721 0.99647 0.96572 0.96706 1.21011 0.96155 0.97542 0.95386 0.94426 1.21165 0.94477 0.98799 0.97588 1.18260 0.92210 0.92023 0.92484 1.21166 1.28820 1.05820 0.98365 0.93310 1.25605 0.94950 0.95932 1.01977 1.70103 1.28190 1.25504 1.32267 0.85863 0.77140 0.79181 0.81486 1.20425 1.21458 1.19176 0.93283 0.92380 0.91836 0.93330 0.91826 0.95789 0.92358 0.94999 0.90865 0.91426 0.90676 0.94198 0.93638 0.91114 1.00829 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.98 72.37 0.65 -3.34 16 2 C -0.08 -2.91 2.21 -11.01 -0.02 -2.93 16 3 C -0.08 -3.11 4.39 29.99 0.13 -2.98 16 4 C -0.08 -3.49 2.50 -11.07 -0.03 -3.51 16 5 H 0.03 1.71 6.87 -2.18 -0.01 1.69 16 6 C -0.11 -4.27 5.14 30.76 0.16 -4.11 16 7 C -0.11 -3.33 5.38 30.48 0.16 -3.17 16 8 C -0.11 -3.70 5.14 30.76 0.16 -3.54 16 9 C -0.08 -3.34 2.58 -11.07 -0.03 -3.37 16 10 H 0.04 1.59 8.17 -2.18 -0.02 1.57 16 11 C -0.08 -2.88 4.39 29.98 0.13 -2.75 16 12 C 0.07 3.44 1.16 -12.25 -0.01 3.42 16 13 C -0.50 -27.77 6.68 25.27 0.17 -27.61 16 14 H 0.05 2.67 7.42 -2.91 -0.02 2.65 16 15 C 0.01 0.75 5.21 84.66 0.44 1.19 16 16 N -0.92 -55.13 12.09 21.45 0.26 -54.87 16 17 Si 0.94 44.72 29.55 68.60 2.03 46.75 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.06 1.55 8.11 -2.39 -0.02 1.53 16 24 H 0.05 2.10 6.52 -2.29 -0.01 2.08 16 25 H 0.06 2.13 6.49 -2.02 -0.01 2.12 16 26 H 0.02 0.97 8.22 -1.91 -0.02 0.95 16 27 H 0.06 2.01 8.13 -2.42 -0.02 1.99 16 28 H 0.03 1.33 8.10 -2.42 -0.02 1.31 16 29 H 0.07 2.12 5.52 -2.39 -0.01 2.10 16 30 H 0.07 1.80 8.17 -2.20 -0.02 1.78 16 31 H 0.07 2.10 8.13 -2.42 -0.02 2.08 16 32 H 0.04 1.44 8.10 -2.43 -0.02 1.42 16 33 H 0.04 1.51 8.22 -1.91 -0.02 1.50 16 34 H 0.07 2.07 6.51 -2.02 -0.01 2.06 16 35 H -0.03 -1.55 7.91 -1.45 -0.01 -1.56 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -60.99 261.90 5.24 -55.75 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.04 Total: 5.08 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 1.91 Total: -52.70 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.26 Total: -54.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -60.99 5.24 -55.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.243 kcal (2) G-P(sol) polarization free energy of solvation -60.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds