Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46918 * 2 1 4 4 C 1.50704 * 109.46927 * 119.99526 * 2 1 3 5 5 H 1.08002 * 119.99392 * 119.99901 * 4 2 1 6 6 C 1.37877 * 119.99972 * 300.00464 * 4 2 1 7 7 N 1.31509 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99551 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47280 * 60.00122 * 8 6 4 10 10 H 1.48497 * 109.46973 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47482 * 299.99523 * 8 6 4 12 12 N 1.46894 * 109.47363 * 239.99685 * 2 1 3 13 13 C 1.48122 * 111.00211 * 181.50836 * 12 2 1 14 14 C 1.51413 * 105.39281 * 267.83817 * 13 12 2 15 15 C 1.31047 * 109.35498 * 342.80379 * 14 13 12 16 16 C 1.51413 * 109.35498 * 180.02562 * 15 14 13 17 17 N 1.48131 * 105.39005 * 342.80342 * 16 15 14 18 18 C 1.48121 * 102.71341 * 26.53010 * 17 16 15 19 19 C 1.48137 * 110.99725 * 67.93846 * 12 2 1 20 20 H 1.08999 * 109.47011 * 303.14003 * 1 2 3 21 21 H 1.09000 * 109.46608 * 63.13970 * 1 2 3 22 22 H 1.09004 * 109.47137 * 183.13815 * 1 2 3 23 23 H 0.96998 * 119.99912 * 179.97438 * 7 6 4 24 24 H 1.08998 * 110.26020 * 26.81868 * 13 12 2 25 25 H 1.09004 * 110.26579 * 148.86035 * 13 12 2 26 26 H 1.09000 * 110.25848 * 223.81916 * 16 15 14 27 27 H 1.09007 * 110.25838 * 101.78330 * 16 15 14 28 28 H 1.00902 * 110.99427 * 145.22739 * 17 16 15 29 29 H 1.09002 * 110.25990 * 92.45226 * 18 17 16 30 30 H 1.09003 * 110.25918 * 214.48319 * 18 17 16 31 31 H 1.08998 * 110.26301 * 333.18478 * 19 12 2 32 32 H 1.08998 * 110.25752 * 211.14358 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1207 4.0083 10 1 1.8268 -0.4197 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0197 -0.6925 -1.1993 13 6 3.5000 -0.7439 -1.2155 14 6 3.9364 0.4844 -1.9859 15 6 2.9209 0.9514 -2.6701 16 6 3.3575 2.1792 -3.4411 17 7 4.6212 2.6153 -2.8030 18 6 5.1504 1.3548 -2.2329 19 6 1.7070 0.0806 -2.4236 20 1 -0.3633 0.5618 0.8605 21 1 -0.3632 0.4643 -0.9168 22 1 -0.3633 -1.0262 0.0563 23 1 0.7087 1.1615 3.4843 24 1 3.8900 -0.7097 -0.1982 25 1 3.8409 -1.6474 -1.7211 26 1 2.6040 2.9628 -3.3610 27 1 3.5304 1.9264 -4.4872 28 1 5.2575 2.9987 -3.4859 29 1 5.8226 0.8725 -2.9427 30 1 5.6697 1.5534 -1.2953 31 1 0.8244 0.7000 -2.2638 32 1 1.5486 -0.5934 -3.2654 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306378730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = 60.713794 kcal Electronic energy + Delta-G solvation = -13989.973676 eV Core-core repulsion = 11758.916455 eV Total energy + Delta-G solvation = -2231.057221 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.96221 -36.59607 -33.26050 -30.61533 -28.99929 -27.81891 -26.41956 -24.65365 -23.12985 -20.96765 -19.38846 -17.46172 -16.29291 -16.07268 -15.19161 -14.97298 -13.95948 -13.52848 -13.24638 -13.05188 -12.59168 -12.09755 -11.82399 -11.46160 -11.22438 -10.93944 -10.90229 -10.81481 -10.62073 -10.24268 -10.13789 -9.92084 -8.94765 -8.90242 -8.45280 -7.86513 -7.51361 -5.99848 -4.04424 2.48591 3.33328 3.37619 3.40233 4.35811 4.40391 4.47356 4.81854 5.27119 5.33074 5.43094 5.49226 5.74604 5.85019 5.98996 6.12972 6.22492 6.39525 6.51654 6.58306 6.84243 6.89672 7.03704 7.09478 7.25380 7.31827 7.51363 7.58127 7.81737 8.10708 8.29882 8.51438 9.00245 9.59661 11.07375 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.039557 B = 0.009710 C = 0.008968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.662424 B = 2883.003671 C = 3121.442271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.198 3.802 3 H 0.006 0.994 4 C -0.507 4.507 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.491 5.491 13 C 0.091 3.909 14 C -0.181 4.181 15 C -0.203 4.203 16 C 0.095 3.905 17 N -0.657 5.657 18 C 0.093 3.907 19 C 0.087 3.913 20 H 0.084 0.916 21 H 0.008 0.992 22 H 0.035 0.965 23 H 0.261 0.739 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.338 0.662 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 0.762 -9.893 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.092 3.908 3 H 0.024 0.976 4 C -0.546 4.546 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.212 5.212 13 C -0.038 4.038 14 C -0.184 4.184 15 C -0.205 4.205 16 C -0.034 4.034 17 N -0.285 5.285 18 C -0.037 4.037 19 C -0.042 4.042 20 H 0.103 0.897 21 H 0.027 0.973 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.153 0.847 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.495 0.653 -9.065 10.139 hybrid contribution 0.983 0.013 0.049 0.985 sum 5.478 0.666 -9.016 10.571 Atomic orbital electron populations 1.21802 0.97482 1.00104 0.99388 1.19478 0.92553 0.92761 0.86013 0.97637 1.21039 1.31414 1.12350 0.89793 0.91994 1.24919 0.95153 0.95017 0.98996 1.69890 1.36660 1.22844 1.23547 0.86577 0.79098 0.79736 0.82094 1.20314 1.21332 1.20201 1.65757 1.07251 1.45401 1.02822 1.21579 0.89754 0.92057 1.00373 1.24257 0.95755 0.98522 0.99831 1.24140 0.98900 0.97370 1.00132 1.21142 0.92800 0.94641 0.94817 1.63914 1.05612 1.25010 1.33945 1.21179 0.94363 0.88036 1.00085 1.21631 0.94547 0.93193 0.94862 0.89731 0.97321 0.94598 0.92894 0.88690 0.90713 0.89995 0.93373 0.84734 0.93237 0.89651 0.90756 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.98 37.16 0.33 -2.92 16 2 C 0.20 5.15 1.78 -68.86 -0.12 5.03 16 3 H 0.01 0.17 8.03 -51.93 -0.42 -0.24 16 4 C -0.51 -14.08 7.49 -34.44 -0.26 -14.34 16 5 H 0.06 1.70 7.03 -52.49 -0.37 1.33 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.81 11.35 55.43 0.63 -25.19 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.49 -10.99 5.39 -227.90 -1.23 -12.22 16 13 C 0.09 1.86 6.29 -3.95 -0.02 1.83 16 14 C -0.18 -3.38 7.16 -100.38 -0.72 -4.10 16 15 C -0.20 -3.71 7.10 -100.38 -0.71 -4.42 16 16 C 0.10 1.43 7.48 -3.95 -0.03 1.40 16 17 N -0.66 -9.73 7.81 -113.66 -0.89 -10.62 16 18 C 0.09 1.43 7.48 -3.95 -0.03 1.40 16 19 C 0.09 1.67 6.43 -3.94 -0.03 1.64 16 20 H 0.08 2.30 6.16 -51.93 -0.32 1.98 16 21 H 0.01 0.18 6.34 -51.93 -0.33 -0.15 16 22 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.09 2.13 6.20 -51.93 -0.32 1.81 16 25 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.34 3.81 8.92 -39.29 -0.35 3.46 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.46 6.03 -51.93 -0.31 1.15 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 254.92 15.07 3.84 3.84 Total: -1.00 -29.78 254.92 -8.86 -38.65 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.51 Total: 1.90 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.68 Total: -12.86 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -1.49 Total: -48.02 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.78 -8.86 -38.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306378730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.359 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds