Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46918 * 2 1 4 4 C 1.50704 * 109.46927 * 119.99526 * 2 1 3 5 5 H 1.08002 * 119.99392 * 119.99901 * 4 2 1 6 6 C 1.37877 * 119.99972 * 300.00464 * 4 2 1 7 7 N 1.31509 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99551 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47280 * 60.00122 * 8 6 4 10 10 H 1.48497 * 109.46973 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47482 * 299.99523 * 8 6 4 12 12 N 1.46894 * 109.47363 * 239.99685 * 2 1 3 13 13 C 1.48122 * 111.00211 * 181.50836 * 12 2 1 14 14 C 1.51413 * 105.39281 * 267.83817 * 13 12 2 15 15 C 1.31047 * 109.35498 * 342.80379 * 14 13 12 16 16 C 1.51413 * 109.35498 * 180.02562 * 15 14 13 17 17 N 1.48131 * 105.39005 * 342.80342 * 16 15 14 18 18 C 1.48121 * 102.71341 * 26.53010 * 17 16 15 19 19 C 1.48137 * 110.99725 * 67.93846 * 12 2 1 20 20 H 1.08999 * 109.47011 * 303.14003 * 1 2 3 21 21 H 1.09000 * 109.46608 * 63.13970 * 1 2 3 22 22 H 1.09004 * 109.47137 * 183.13815 * 1 2 3 23 23 H 0.96998 * 119.99912 * 179.97438 * 7 6 4 24 24 H 1.08998 * 110.26020 * 26.81868 * 13 12 2 25 25 H 1.09004 * 110.26579 * 148.86035 * 13 12 2 26 26 H 1.09000 * 110.25848 * 223.81916 * 16 15 14 27 27 H 1.09007 * 110.25838 * 101.78330 * 16 15 14 28 28 H 1.00902 * 110.99427 * 145.22739 * 17 16 15 29 29 H 1.09002 * 110.25990 * 92.45226 * 18 17 16 30 30 H 1.09003 * 110.25918 * 214.48319 * 18 17 16 31 31 H 1.08998 * 110.26301 * 333.18478 * 19 12 2 32 32 H 1.08998 * 110.25752 * 211.14358 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1207 4.0083 10 1 1.8268 -0.4197 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0197 -0.6925 -1.1993 13 6 3.5000 -0.7439 -1.2155 14 6 3.9364 0.4844 -1.9859 15 6 2.9209 0.9514 -2.6701 16 6 3.3575 2.1792 -3.4411 17 7 4.6212 2.6153 -2.8030 18 6 5.1504 1.3548 -2.2329 19 6 1.7070 0.0806 -2.4236 20 1 -0.3633 0.5618 0.8605 21 1 -0.3632 0.4643 -0.9168 22 1 -0.3633 -1.0262 0.0563 23 1 0.7087 1.1615 3.4843 24 1 3.8900 -0.7097 -0.1982 25 1 3.8409 -1.6474 -1.7211 26 1 2.6040 2.9628 -3.3610 27 1 3.5304 1.9264 -4.4872 28 1 5.2575 2.9987 -3.4859 29 1 5.8226 0.8725 -2.9427 30 1 5.6697 1.5534 -1.2953 31 1 0.8244 0.7000 -2.2638 32 1 1.5486 -0.5934 -3.2654 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306378730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = 38.062347 kcal Electronic energy + Delta-G solvation = -13990.955916 eV Core-core repulsion = 11758.916455 eV Total energy + Delta-G solvation = -2232.039461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.42114 -38.12170 -35.22703 -32.46992 -30.41320 -29.47580 -28.00491 -26.57515 -24.74728 -22.41205 -21.23663 -19.01284 -18.09344 -17.48894 -17.02483 -16.43317 -15.81998 -15.20908 -14.82865 -14.28849 -14.15834 -13.92185 -13.17603 -13.07060 -12.97456 -12.76412 -12.66676 -12.43054 -12.31219 -12.23269 -12.05568 -11.86260 -10.96787 -10.56750 -10.20794 -9.42406 -9.07867 -8.13589 -6.25600 1.07822 1.41283 1.43432 1.51019 2.40728 3.09240 3.14190 3.20262 3.33361 3.82216 4.24415 4.36016 4.40671 4.50380 4.57666 4.70184 4.77287 4.82016 4.88375 4.95171 5.01969 5.12940 5.38453 5.45286 5.47231 5.61177 5.67615 5.87090 6.13889 6.25802 6.38453 6.53003 6.86394 7.42614 8.93001 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.039557 B = 0.009710 C = 0.008968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.662424 B = 2883.003671 C = 3121.442271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.209 3.791 3 H -0.038 1.038 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.502 5.502 13 C 0.090 3.910 14 C -0.203 4.203 15 C -0.210 4.210 16 C 0.100 3.900 17 N -0.670 5.670 18 C 0.098 3.902 19 C 0.083 3.917 20 H 0.059 0.941 21 H 0.030 0.970 22 H 0.033 0.967 23 H 0.262 0.738 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.360 0.640 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 0.471 -11.037 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H -0.021 1.021 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.223 5.223 13 C -0.039 4.039 14 C -0.205 4.205 15 C -0.212 4.212 16 C -0.029 4.029 17 N -0.300 5.300 18 C -0.031 4.031 19 C -0.045 4.045 20 H 0.078 0.922 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.177 0.823 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.460 0.362 -10.238 11.609 hybrid contribution 0.683 0.109 0.345 0.773 sum 6.143 0.472 -9.893 11.655 Atomic orbital electron populations 1.21628 0.97070 0.99630 0.99414 1.19190 0.92812 0.90395 0.87431 1.02088 1.21325 1.31489 1.12393 0.90939 0.92265 1.25742 0.95290 0.95715 1.02025 1.70026 1.37591 1.24094 1.24186 0.85551 0.78738 0.78726 0.78283 1.19618 1.20896 1.19449 1.65700 1.08707 1.45379 1.02544 1.21531 0.88624 0.94314 0.99434 1.24396 0.97805 0.98456 0.99846 1.24390 0.97868 0.98339 1.00585 1.21177 0.92768 0.92949 0.96003 1.63825 1.06154 1.24815 1.35206 1.21165 0.93348 0.87897 1.00681 1.21694 0.94820 0.93797 0.94202 0.92203 0.95090 0.94798 0.92882 0.91542 0.88566 0.90094 0.90036 0.82270 0.90085 0.90572 0.91619 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.98 71.98 0.65 -5.44 16 2 C 0.21 11.11 1.78 44.17 0.08 11.19 16 3 H -0.04 -2.34 8.03 -2.39 -0.02 -2.36 16 4 C -0.52 -29.59 7.49 25.60 0.19 -29.39 16 5 H 0.06 3.30 7.03 -2.91 -0.02 3.28 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -54.39 11.35 21.45 0.24 -54.15 16 8 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.50 -22.47 5.39 -874.95 -4.71 -27.19 16 13 C 0.09 3.64 6.29 85.55 0.54 4.18 16 14 C -0.20 -7.34 7.16 -16.08 -0.12 -7.46 16 15 C -0.21 -7.32 7.10 -16.08 -0.11 -7.43 16 16 C 0.10 2.74 7.48 85.55 0.64 3.38 16 17 N -0.67 -18.09 7.81 -513.50 -4.01 -22.10 16 18 C 0.10 2.83 7.48 85.55 0.64 3.47 16 19 C 0.08 3.12 6.43 85.55 0.55 3.67 16 20 H 0.06 3.34 6.16 -2.39 -0.01 3.32 16 21 H 0.03 1.38 6.34 -2.39 -0.02 1.37 16 22 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 24 H 0.07 3.05 6.20 -2.39 -0.01 3.04 16 25 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.36 6.90 8.92 -89.69 -0.80 6.10 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 2.55 6.03 -2.39 -0.01 2.54 16 32 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -64.39 254.92 -2.63 -67.02 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.32 Total: 12.73 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 3.50 Total: -22.74 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -8.48 Total: -103.44 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.39 -2.63 -67.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306378730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.082 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds