Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47089 * 2 1 4 4 C 1.47199 * 109.47275 * 119.99691 * 2 1 3 5 5 N 2.60799 * 109.47138 * 119.99596 * 2 1 3 6 6 N 1.46895 * 109.47459 * 239.99820 * 2 1 3 7 7 C 1.46852 * 110.99707 * 298.95639 * 6 2 1 8 8 C 1.53042 * 109.52306 * 185.83684 * 7 6 2 9 9 C 1.53117 * 109.28003 * 300.82108 * 8 7 6 10 10 C 1.53120 * 109.16057 * 57.65285 * 9 8 7 11 11 H 1.08992 * 109.50657 * 62.32710 * 10 9 8 12 12 C 1.50704 * 109.50273 * 182.40771 * 10 9 8 13 13 H 1.08005 * 120.00132 * 114.50687 * 12 10 9 14 14 C 1.37878 * 120.00104 * 294.51018 * 12 10 9 15 15 N 1.31511 * 120.00375 * 163.06003 * 14 12 10 16 16 Si 1.86806 * 119.99552 * 342.78358 * 14 12 10 17 17 H 1.48503 * 109.46818 * 270.27416 * 16 14 12 18 18 H 1.48500 * 109.47430 * 30.27359 * 16 14 12 19 19 H 1.48501 * 109.47024 * 150.27775 * 16 14 12 20 20 C 1.46856 * 111.00153 * 63.16010 * 6 2 1 21 21 H 1.09007 * 109.47281 * 60.00166 * 1 2 3 22 22 H 1.08997 * 109.47492 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47163 * 300.00730 * 1 2 3 24 24 H 1.09000 * 109.46348 * 65.82312 * 7 6 2 25 25 H 1.09000 * 109.46135 * 305.85399 * 7 6 2 26 26 H 1.08993 * 109.50384 * 180.87437 * 8 7 6 27 27 H 1.09001 * 109.50172 * 60.75942 * 8 7 6 28 28 H 1.08996 * 109.51954 * 297.75086 * 9 8 7 29 29 H 1.08996 * 109.57653 * 177.59239 * 9 8 7 30 30 H 0.96999 * 119.99360 * 354.43171 * 15 14 12 31 31 H 1.08999 * 109.45526 * 54.15201 * 20 6 2 32 32 H 1.08995 * 109.46076 * 294.17937 * 20 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 1.2019 5 7 2.3993 -1.2293 2.1295 6 7 2.0197 -0.6925 -1.1993 7 6 1.5693 -2.0901 -1.2208 8 6 2.2148 -2.8174 -2.4025 9 6 1.8211 -2.1147 -3.7047 10 6 2.2584 -0.6489 -3.6369 11 1 3.3433 -0.5965 -3.5472 12 6 1.8221 0.0648 -4.8905 13 1 1.0852 0.8525 -4.8349 14 6 2.3637 -0.2877 -6.1085 15 7 1.7690 0.0776 -7.2231 16 14 3.9465 -1.2776 -6.1754 17 1 5.1081 -0.3527 -6.2001 18 1 4.0349 -2.1514 -4.9779 19 1 3.9548 -2.1156 -7.4013 20 6 1.6116 0.0156 -2.4195 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.4847 -2.1206 -1.3241 25 1 1.8593 -2.5794 -0.2909 26 1 1.8683 -3.8505 -2.4273 27 1 3.2991 -2.7992 -2.2927 28 1 0.7401 -2.1667 -3.8342 29 1 2.3126 -2.6029 -4.5462 30 1 0.9087 0.5243 -7.1898 31 1 1.9323 1.0556 -2.3601 32 1 0.5267 -0.0249 -2.5172 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306587323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = 1.631009 kcal Electronic energy + Delta-G solvation = -13920.115531 eV Core-core repulsion = 11686.496288 eV Total energy + Delta-G solvation = -2233.619243 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53656 -37.70069 -35.82079 -34.25550 -31.90020 -30.66702 -26.59459 -26.23855 -23.58013 -22.87363 -20.20357 -19.67046 -18.29759 -17.07383 -16.11621 -15.71417 -15.52419 -15.15737 -14.93936 -14.36538 -14.27086 -14.10855 -13.71325 -13.43924 -12.97856 -12.89818 -12.77387 -12.52556 -12.34691 -12.02069 -11.67482 -11.50343 -11.35014 -11.00025 -10.65947 -10.36135 -9.28146 -8.64045 -6.26782 1.54714 1.57434 1.58954 1.74503 1.76714 2.56476 2.82602 3.13544 3.15938 3.94605 4.09615 4.14468 4.23701 4.34920 4.52160 4.59818 4.71870 4.77317 4.85232 4.94598 4.98920 5.08588 5.23681 5.26223 5.30371 5.59663 5.80922 5.89976 6.09341 6.15132 6.29652 6.52347 6.69820 7.48660 8.73342 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.048638 B = 0.009123 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.543695 B = 3068.407360 C = 3302.526230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.174 3.826 3 H 0.147 0.853 4 C 0.247 3.753 5 N -0.477 5.477 6 N -0.540 5.540 7 C 0.057 3.943 8 C -0.114 4.114 9 C -0.117 4.117 10 C 0.021 3.979 11 H 0.027 0.973 12 C -0.593 4.593 13 H 0.024 0.976 14 C -0.017 4.017 15 N -0.946 5.946 16 Si 1.077 2.923 17 H -0.279 1.279 18 H -0.237 1.237 19 H -0.294 1.294 20 C 0.088 3.912 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.253 0.747 31 H 0.074 0.926 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -2.195 12.740 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.063 3.937 3 H 0.164 0.836 4 C -0.071 4.071 5 N -0.154 5.154 6 N -0.265 5.265 7 C -0.071 4.071 8 C -0.152 4.152 9 C -0.155 4.155 10 C 0.001 3.999 11 H 0.045 0.955 12 C -0.632 4.632 13 H 0.043 0.957 14 C -0.215 4.215 15 N -0.583 5.583 16 Si 0.900 3.100 17 H -0.205 1.205 18 H -0.161 1.161 19 H -0.221 1.221 20 C -0.039 4.039 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.649 -3.619 13.136 13.641 hybrid contribution -2.390 1.137 0.050 2.647 sum -1.741 -2.482 13.187 13.531 Atomic orbital electron populations 1.22396 0.92965 1.03655 1.04841 1.19433 0.94855 0.98012 0.81399 0.83560 1.29244 0.91689 0.92343 0.93798 1.81187 1.10391 1.10242 1.13577 1.62186 1.60170 1.02697 1.01472 1.22111 0.98167 0.88304 0.98483 1.21612 1.00856 0.98789 0.93924 1.21926 0.99661 0.97433 0.96470 1.19025 0.96172 0.92411 0.92249 0.95496 1.22217 1.26189 1.20790 0.93969 0.95720 1.26986 1.04930 0.97735 0.91863 1.70936 1.16832 1.40353 1.30135 0.83690 0.72931 0.76499 0.76881 1.20478 1.16070 1.22086 1.21912 0.97431 0.97365 0.87179 0.90072 0.91933 0.89221 0.93451 0.91271 0.90463 0.92097 0.93975 0.93875 0.93784 0.90731 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.46 71.98 0.61 -2.58 16 2 C 0.17 3.73 2.84 43.11 0.12 3.85 16 3 H 0.15 2.51 8.11 -2.39 -0.02 2.49 16 4 C 0.25 6.16 13.29 89.44 1.19 7.35 16 5 N -0.48 -14.10 18.54 20.01 0.37 -13.73 16 6 N -0.54 -15.36 4.64 -881.78 -4.09 -19.45 16 7 C 0.06 1.58 4.71 86.33 0.41 1.99 16 8 C -0.11 -3.54 6.09 30.65 0.19 -3.35 16 9 C -0.12 -4.58 4.72 30.67 0.14 -4.44 16 10 C 0.02 0.90 1.81 -11.49 -0.02 0.88 16 11 H 0.03 1.19 6.71 -2.39 -0.02 1.17 16 12 C -0.59 -31.67 8.83 25.60 0.23 -31.45 16 13 H 0.02 1.43 7.99 -2.91 -0.02 1.40 16 14 C -0.02 -0.97 5.35 84.66 0.45 -0.52 16 15 N -0.95 -58.17 13.69 21.45 0.29 -57.87 16 16 Si 1.08 49.20 26.31 68.60 1.80 51.00 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.24 -9.55 5.50 99.48 0.55 -9.00 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 C 0.09 3.00 4.20 86.32 0.36 3.36 16 21 H 0.08 1.52 6.60 -2.38 -0.02 1.51 16 22 H 0.06 1.17 6.55 -2.39 -0.02 1.15 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.24 6.65 -2.39 -0.02 1.22 16 25 H 0.07 1.82 6.86 -2.39 -0.02 1.81 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.79 5.09 -2.39 -0.01 1.77 16 30 H 0.25 15.70 8.73 -92.71 -0.81 14.89 16 31 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 32 H 0.03 1.17 6.69 -2.39 -0.02 1.15 16 Total: -1.00 -63.56 253.85 2.96 -60.60 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 0.90 Total: 4.36 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.68 Total: -24.91 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -3.42 Total: -91.05 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.80 Total: 51.00 kcal Total: -63.56 2.96 -60.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306587323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.230 kcal (2) G-P(sol) polarization free energy of solvation -63.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds