Wall clock time and date at job start Mon Mar 30 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46789 * 2 1 4 4 C 1.50698 * 109.47189 * 240.00018 * 2 1 3 5 5 H 1.07997 * 120.00030 * 274.99958 * 4 2 1 6 6 C 1.37876 * 119.99611 * 95.00071 * 4 2 1 7 7 N 1.31524 * 119.99845 * 184.91468 * 6 4 2 8 8 Si 1.86800 * 120.00394 * 4.91718 * 6 4 2 9 9 H 1.48500 * 109.46981 * 84.83682 * 8 6 4 10 10 H 1.48499 * 109.47159 * 204.83383 * 8 6 4 11 11 H 1.48498 * 109.46891 * 324.83433 * 8 6 4 12 12 N 1.46500 * 109.47273 * 120.00078 * 2 1 3 13 13 N 1.40101 * 120.00105 * 270.00370 * 12 2 1 14 14 C 1.28007 * 120.00501 * 179.97438 * 13 12 2 15 15 C 1.51541 * 136.20717 * 359.62718 * 14 13 12 16 16 C 1.52726 * 87.28304 * 205.47220 * 15 14 13 17 17 C 1.52330 * 128.80727 * 114.64045 * 16 15 14 18 18 C 1.52328 * 129.07550 * 195.17306 * 16 15 14 19 19 C 1.51535 * 136.21842 * 179.97438 * 14 13 12 20 20 H 1.08997 * 109.46722 * 55.02515 * 1 2 3 21 21 H 1.08994 * 109.47260 * 175.02830 * 1 2 3 22 22 H 1.09000 * 109.47089 * 295.02736 * 1 2 3 23 23 H 0.96998 * 119.99917 * 179.97438 * 7 6 4 24 24 H 0.96995 * 120.00027 * 90.00005 * 12 2 1 25 25 H 1.09002 * 113.59790 * 319.99833 * 15 14 13 26 26 H 1.09004 * 113.59952 * 90.85030 * 15 14 13 27 27 H 1.09002 * 117.51855 * 225.66684 * 17 16 15 28 28 H 1.08999 * 117.51848 * 10.79975 * 17 16 15 29 29 H 1.08997 * 117.51878 * 349.61203 * 18 16 15 30 30 H 1.08996 * 117.51910 * 134.73993 * 18 16 15 31 31 H 1.09002 * 113.59845 * 269.15261 * 19 14 13 32 32 H 1.09004 * 113.59453 * 39.99912 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7854 -1.2290 6 6 2.3603 0.0122 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3136 1.8792 -2.3173 9 1 3.5992 2.3949 -1.7822 10 1 2.1058 2.3992 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0299 2.3748 14 6 2.6781 -0.5736 3.4201 15 6 3.0358 -1.9987 3.7911 16 6 2.7237 -1.6233 5.2383 17 6 1.6133 -2.1444 6.1415 18 6 3.0809 -2.3636 6.5207 19 6 3.0430 -0.1812 4.8376 20 1 -0.3633 0.5891 -0.8421 21 1 -0.3633 -1.0237 -0.0891 22 1 -0.3633 0.4348 0.9312 23 1 2.9364 -0.1047 -4.2556 24 1 2.1801 -1.6467 1.1721 25 1 2.3536 -2.7415 3.3778 26 1 4.0840 -2.2441 3.6203 27 1 1.0481 -1.4124 6.7184 28 1 1.0477 -3.0098 5.7962 29 1 3.4804 -3.3732 6.4248 30 1 3.4806 -1.7758 7.3469 31 1 4.0932 0.0835 4.9605 32 1 2.3666 0.5534 5.2748 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306676451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:46 Heat of formation + Delta-G solvation = 67.287399 kcal Electronic energy + Delta-G solvation = -13152.233714 eV Core-core repulsion = 10921.461546 eV Total energy + Delta-G solvation = -2230.772168 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.43398 -37.73341 -35.69094 -34.04402 -32.39704 -28.56035 -27.27888 -26.75600 -23.25062 -22.18737 -21.16697 -19.57017 -18.63781 -17.23822 -16.95295 -16.09967 -15.78497 -15.56732 -14.82240 -14.58299 -14.42339 -13.83036 -13.60283 -13.11479 -12.92098 -12.72700 -12.49547 -12.27411 -12.06349 -11.82303 -11.59931 -11.31481 -11.17825 -10.85425 -10.68252 -10.38680 -8.56054 -8.39035 -6.46245 1.31873 1.34108 1.45467 1.52110 2.10801 2.28378 2.96529 3.01984 3.44052 3.66343 3.79244 4.14866 4.18397 4.43865 4.72964 4.74282 4.75190 4.82563 4.85710 4.87149 4.88514 5.03418 5.09873 5.12381 5.19644 5.35157 5.42228 5.50281 5.87758 6.20290 6.54869 6.65956 7.22424 7.85741 8.76936 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.057363 B = 0.006436 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.002135 B = 4349.639049 C = 4397.721312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.274 3.726 3 H 0.031 0.969 4 C -0.529 4.529 5 H 0.039 0.961 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.941 3.059 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.247 1.247 12 N -0.653 5.653 13 N -0.241 5.241 14 C -0.011 4.011 15 C -0.084 4.084 16 C -0.163 4.163 17 C -0.155 4.155 18 C -0.140 4.140 19 C -0.010 4.010 20 H 0.051 0.949 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.271 0.729 24 H 0.369 0.631 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -0.146 19.028 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.170 3.830 3 H 0.049 0.951 4 C -0.569 4.569 5 H 0.057 0.943 6 C -0.174 4.174 7 N -0.575 5.575 8 Si 0.764 3.236 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.170 1.170 12 N -0.389 5.389 13 N -0.046 5.046 14 C -0.208 4.208 15 C -0.125 4.125 16 C -0.164 4.164 17 C -0.192 4.192 18 C -0.177 4.177 19 C -0.049 4.049 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.205 0.795 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.274 0.907 18.281 18.305 hybrid contribution 0.289 -0.743 -0.684 1.051 sum 0.015 0.164 17.596 17.597 Atomic orbital electron populations 1.22227 0.97951 1.00587 0.99483 1.18569 0.90924 0.92630 0.80865 0.95086 1.21243 1.44730 0.94306 0.96580 0.94252 1.25763 0.93417 1.03584 0.94588 1.70013 1.46752 1.38169 1.02579 0.85846 0.79956 0.79853 0.77911 1.19778 1.20222 1.17021 1.48388 1.76657 1.07484 1.06368 1.73186 1.11530 1.26505 0.93364 1.25861 1.02218 0.97611 0.95101 1.22009 1.01877 0.94176 0.94413 1.21447 1.07133 0.96436 0.91422 1.22882 0.92038 1.02866 1.01379 1.22893 0.97097 1.01465 0.96197 1.21470 1.02728 0.94974 0.85769 0.93014 0.93766 0.94012 0.91983 0.79540 0.92438 0.87959 0.87554 0.88928 0.87940 0.86703 0.86513 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 9.50 71.98 0.68 -5.71 16 2 C 0.27 13.71 2.89 44.25 0.13 13.84 16 3 H 0.03 1.60 5.29 -2.39 -0.01 1.59 16 4 C -0.53 -30.52 9.08 25.60 0.23 -30.29 16 5 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 6 C 0.03 1.52 5.47 84.65 0.46 1.99 16 7 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 8 Si 0.94 44.70 26.99 68.60 1.85 46.55 16 9 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.25 -11.02 6.82 99.48 0.68 -10.34 16 12 N -0.65 -29.98 6.09 -172.52 -1.05 -31.03 16 13 N -0.24 -10.00 11.50 -40.01 -0.46 -10.46 16 14 C -0.01 -0.38 8.46 47.03 0.40 0.02 16 15 C -0.08 -2.26 7.64 29.96 0.23 -2.03 16 16 C -0.16 -3.42 3.14 -52.74 -0.17 -3.59 16 17 C -0.15 -2.74 10.53 30.43 0.32 -2.42 16 18 C -0.14 -2.08 10.53 30.42 0.32 -1.76 16 19 C -0.01 -0.23 7.97 30.07 0.24 0.01 16 20 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 21 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 24 H 0.37 16.55 8.35 -213.33 -1.78 14.76 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -65.93 274.36 2.78 -63.15 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.71 Total: 19.11 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 2.85 Total: -29.94 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -1.21 Total: -98.87 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.85 Total: 46.55 kcal Total: -65.93 2.78 -63.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306676451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.435 kcal (2) G-P(sol) polarization free energy of solvation -65.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds