Wall clock time and date at job start Mon Mar 30 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39447 * 120.54000 * 41.94062 * 3 2 1 5 5 C 1.38024 * 120.14155 * 179.97438 * 4 3 2 6 6 C 1.38802 * 121.30802 * 0.02562 * 5 4 3 7 7 F 1.35102 * 119.44174 * 179.97438 * 6 5 4 8 8 C 1.38034 * 121.11017 * 359.71792 * 6 5 4 9 9 F 1.35100 * 120.12245 * 180.28155 * 8 6 5 10 10 C 1.41022 * 119.75394 * 0.53695 * 8 6 5 11 11 C 1.40686 * 120.62140 * 179.74961 * 10 8 6 12 12 H 1.07996 * 120.00481 * 143.71851 * 11 10 8 13 13 C 1.40254 * 119.99476 * 323.43722 * 11 10 8 14 14 N 1.30668 * 120.00431 * 340.64894 * 13 11 10 15 15 Si 1.86801 * 119.99708 * 160.63710 * 13 11 10 16 16 H 1.48502 * 109.47086 * 60.00554 * 15 13 11 17 17 H 1.48507 * 109.46862 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47382 * 300.00284 * 15 13 11 19 19 H 1.08003 * 119.92509 * 0.02562 * 4 3 2 20 20 H 1.07993 * 119.34135 * 180.02562 * 5 4 3 21 21 H 0.96994 * 120.00310 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2770 -0.8924 -0.8027 5 6 4.6572 -0.8843 -0.7967 6 6 5.3698 0.0019 -0.0008 7 9 6.7204 -0.0233 -0.0239 8 6 4.7218 0.9118 0.8100 9 9 5.4353 1.7691 1.5724 10 6 3.3123 0.9397 0.8437 11 6 2.6331 1.8560 1.6673 12 1 1.7096 2.3034 1.3306 13 6 3.1524 2.1840 2.9282 14 7 4.0234 1.3964 3.5012 15 14 2.5991 3.7472 3.7883 16 1 1.1309 3.6991 4.0064 17 1 3.2909 3.8635 5.0972 18 1 2.9359 4.9221 2.9448 19 1 2.7449 -1.5913 -1.4311 20 1 5.1933 -1.5813 -1.4237 21 1 4.3822 1.6230 4.3734 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306799754.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:19 Heat of formation + Delta-G solvation = -50.550489 kcal Electronic energy + Delta-G solvation = -12929.149539 eV Core-core repulsion = 10212.795170 eV Total energy + Delta-G solvation = -2716.354369 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 209.035 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.25743 -47.06545 -37.49436 -35.11982 -34.08080 -30.26541 -29.34226 -25.95718 -22.42381 -21.65036 -18.08199 -17.82670 -16.52990 -15.44573 -15.33815 -14.98086 -14.74516 -13.59216 -13.40215 -13.10580 -12.90995 -12.71557 -12.29136 -11.99959 -11.58284 -11.36480 -11.32643 -10.87445 -10.70706 -10.39434 -10.05024 -9.44649 -7.79685 -7.57095 -7.26975 -4.94336 1.75033 2.36456 2.90285 2.93032 2.96970 3.66435 3.72943 3.82289 4.32562 4.98990 5.03826 5.22446 5.64132 5.80527 6.20252 6.40914 6.67223 6.87568 6.96841 7.15903 7.32337 7.63180 7.91801 8.19115 8.30648 8.62913 9.68610 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.016192 C = 0.010464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.193685 B = 1728.826881 C = 2675.159999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.302 3.698 3 C -0.164 4.164 4 C -0.010 4.010 5 C -0.265 4.265 6 C 0.109 3.891 7 F -0.152 7.152 8 C 0.002 3.998 9 F -0.130 7.130 10 C 0.138 3.862 11 C -0.426 4.426 12 H 0.097 0.903 13 C 0.073 3.927 14 N -0.742 5.742 15 Si 0.921 3.079 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.256 1.256 19 H 0.116 0.884 20 H 0.119 0.881 21 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 0.197 -1.653 3.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.009 4.009 3 C -0.170 4.170 4 C -0.031 4.031 5 C -0.285 4.285 6 C 0.088 3.912 7 F -0.131 7.131 8 C -0.019 4.019 9 F -0.109 7.109 10 C 0.131 3.869 11 C -0.452 4.452 12 H 0.115 0.885 13 C -0.153 4.153 14 N -0.362 5.362 15 Si 0.743 3.257 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.180 1.180 19 H 0.134 0.866 20 H 0.137 0.863 21 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.096 0.176 -1.387 1.777 hybrid contribution 0.759 0.696 0.669 1.228 sum 1.855 0.871 -0.718 2.172 Atomic orbital electron populations 1.81051 1.12473 1.11472 1.12311 1.25465 0.92368 0.91668 0.91379 1.16675 0.83745 1.04811 1.11792 1.20382 0.92700 0.95049 0.94945 1.19911 0.93752 1.06000 1.08863 1.17686 0.75860 0.97877 0.99782 1.91389 1.30051 1.95954 1.95686 1.17483 0.89516 0.96173 0.98729 1.91372 1.77400 1.68032 1.74067 1.18124 0.88626 0.89932 0.90213 1.19612 1.07911 1.18905 0.98769 0.88538 1.26071 0.93480 0.98124 0.97601 1.69642 1.18861 1.33336 1.14380 0.86107 0.80056 0.80960 0.78539 1.18449 1.19668 1.18045 0.86639 0.86302 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.33 18.54 41.84 0.78 -10.55 14 2 C 0.30 6.71 14.46 -22.47 -0.32 6.38 14 3 C -0.16 -3.60 5.94 -104.18 -0.62 -4.22 14 4 C -0.01 -0.18 9.75 -39.21 -0.38 -0.57 14 5 C -0.26 -5.09 9.95 -39.45 -0.39 -5.48 14 6 C 0.11 2.39 7.26 -39.45 -0.29 2.10 14 7 F -0.15 -3.26 17.14 2.25 0.04 -3.22 14 8 C 0.00 0.06 6.70 -38.60 -0.26 -0.20 14 9 F -0.13 -3.28 14.17 2.25 0.03 -3.25 14 10 C 0.14 3.32 5.56 -104.57 -0.58 2.74 14 11 C -0.43 -10.38 8.30 -37.90 -0.31 -10.69 14 12 H 0.10 2.30 7.68 -52.49 -0.40 1.90 14 13 C 0.07 1.71 4.55 -17.29 -0.08 1.63 14 14 N -0.74 -17.92 11.08 55.56 0.62 -17.30 14 15 Si 0.92 17.59 29.60 -169.99 -5.03 12.56 14 16 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 17 H -0.27 -5.01 7.11 56.52 0.40 -4.61 14 18 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 19 H 0.12 1.82 8.06 -52.48 -0.42 1.39 14 20 H 0.12 1.94 8.06 -52.49 -0.42 1.52 14 21 H 0.30 6.47 8.29 -40.82 -0.34 6.13 14 LS Contribution 216.41 15.07 3.26 3.26 Total: -1.00 -25.55 216.41 -3.93 -29.48 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: -0.38 Total: -2.67 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -3.24 Total: -8.30 kcal Atomic # 7 Polarization: -29.25 SS G_CDS: 1.39 Total: -27.86 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.07 Total: -6.47 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -25.55 -3.93 -29.48 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306799754.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.073 kcal (2) G-P(sol) polarization free energy of solvation -25.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds