Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48501 * 109.47122 * 269.99935 * 3 2 1 5 5 H 1.48501 * 109.47282 * 30.00145 * 3 2 1 6 6 H 1.48496 * 109.46685 * 150.00136 * 3 2 1 7 7 C 1.37872 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00218 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00037 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47567 * 180.02562 * 9 7 2 11 11 C 1.38288 * 120.00061 * 265.00315 * 10 9 7 12 12 C 1.38219 * 120.20136 * 180.02562 * 11 10 9 13 13 C 1.38338 * 120.19922 * 359.96913 * 12 11 10 14 14 C 1.38600 * 120.00468 * 0.02562 * 13 12 11 15 15 N 1.40002 * 120.09607 * 179.97438 * 14 13 12 16 16 C 1.38687 * 120.00566 * 85.23037 * 10 9 7 17 17 S 1.76202 * 120.10052 * 0.02562 * 16 10 9 18 18 H 0.97004 * 119.99786 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47130 * 59.99997 * 9 7 2 20 20 H 1.09003 * 109.46992 * 300.00370 * 9 7 2 21 21 H 1.08005 * 119.90246 * 359.97438 * 11 10 9 22 22 H 1.08000 * 119.90333 * 179.97438 * 12 11 10 23 23 H 1.07999 * 119.99525 * 179.97438 * 13 12 11 24 24 H 0.97001 * 120.00450 * 0.02562 * 15 14 13 25 25 H 0.97005 * 119.99826 * 179.72365 * 15 14 13 26 26 H 1.34502 * 102.99807 * 270.22699 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.3422 -3.2323 1.1940 12 6 4.8039 -4.5351 1.1987 13 6 4.9396 -5.2295 0.0100 14 6 4.6129 -4.6189 -1.1906 15 7 4.7500 -5.3197 -2.3948 16 6 4.1514 -3.3018 -1.1959 17 16 3.7401 -2.5157 -2.7183 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6801 0.8911 20 1 3.8752 -0.6804 -0.8888 21 1 4.2385 -2.6946 2.1250 22 1 5.0594 -5.0125 2.1332 23 1 5.3011 -6.2472 0.0174 24 1 5.0738 -6.2341 -2.3898 25 1 4.5171 -4.8924 -3.2339 26 1 2.4367 -2.8113 -2.8690 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306944034.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = 18.248433 kcal Electronic energy + Delta-G solvation = -11362.459189 eV Core-core repulsion = 9338.761646 eV Total energy + Delta-G solvation = -2023.697543 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.84544 -34.64687 -32.97236 -31.31857 -28.49570 -27.35540 -23.16261 -21.93744 -20.25467 -17.27010 -16.76406 -16.55091 -16.06022 -15.06999 -14.18412 -13.94272 -13.55737 -12.90532 -12.78635 -12.15906 -11.70835 -11.37317 -11.20092 -10.53371 -10.44913 -10.14965 -9.89334 -9.79335 -9.36476 -8.54658 -8.02871 -7.32368 -7.13244 -6.05475 -4.04055 1.66325 2.16955 2.52547 3.34800 3.41049 3.44958 3.54069 4.17422 4.40451 4.46001 5.28157 5.35687 5.55134 5.87841 6.00034 6.15892 6.50614 6.61983 6.83333 7.03406 7.13005 7.35562 7.55836 7.72277 7.80223 8.05303 8.48958 8.95883 9.55260 11.07486 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.039032 B = 0.010894 C = 0.009578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.183685 B = 2569.696105 C = 2922.538922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.004 3.996 10 C 0.058 3.942 11 C -0.188 4.188 12 C -0.050 4.050 13 C -0.232 4.232 14 C 0.254 3.746 15 N -0.876 5.876 16 C -0.184 4.184 17 S -0.131 6.131 18 H 0.264 0.736 19 H 0.029 0.971 20 H 0.047 0.953 21 H 0.121 0.879 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.392 0.608 25 H 0.403 0.597 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.219 -8.261 -2.290 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.543 4.543 8 H 0.084 0.916 9 C -0.034 4.034 10 C 0.055 3.945 11 C -0.210 4.210 12 C -0.069 4.069 13 C -0.256 4.256 14 C 0.146 3.854 15 N -0.417 5.417 16 C -0.301 4.301 17 S 0.027 5.973 18 H 0.073 0.927 19 H 0.047 0.953 20 H 0.065 0.935 21 H 0.139 0.861 22 H 0.135 0.865 23 H 0.133 0.867 24 H 0.219 0.781 25 H 0.234 0.766 26 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 10.048 -7.623 -3.108 12.989 hybrid contribution -0.606 -0.133 0.607 0.868 sum 9.441 -7.756 -2.501 12.472 Atomic orbital electron populations 1.69905 1.06322 1.26978 1.51024 1.24937 0.94681 0.99050 0.94353 0.86783 0.80399 0.83421 0.78888 1.19828 1.21460 1.18749 1.20736 0.87985 0.94347 1.51268 0.91557 1.19046 0.97532 0.88352 0.98432 1.20433 0.86239 0.97073 0.90705 1.20873 1.06625 0.95645 0.97854 1.20947 0.94961 0.94115 0.96846 1.20300 1.13478 1.00607 0.91230 1.17746 0.91166 0.89876 0.86645 1.42851 1.75798 1.16601 1.06428 1.20446 1.17621 0.95870 0.96177 1.85053 1.13904 1.74088 1.24296 0.92655 0.95268 0.93464 0.86110 0.86518 0.86712 0.78069 0.76570 0.96102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.11 15 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 15 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 15 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 15 7 C -0.51 -14.41 9.64 -34.44 -0.33 -14.74 15 8 H 0.07 2.09 7.98 -52.49 -0.42 1.67 15 9 C 0.00 0.09 3.64 -29.03 -0.11 -0.01 15 10 C 0.06 1.27 5.09 -104.44 -0.53 0.74 15 11 C -0.19 -3.60 9.67 -39.57 -0.38 -3.98 15 12 C -0.05 -0.80 10.04 -39.55 -0.40 -1.19 15 13 C -0.23 -3.58 9.89 -39.41 -0.39 -3.97 15 14 C 0.25 4.30 6.76 -83.50 -0.56 3.74 15 15 N -0.88 -11.48 9.04 32.54 0.29 -11.18 15 16 C -0.18 -3.71 6.12 -38.92 -0.24 -3.95 15 17 S -0.13 -2.54 22.59 -107.50 -2.43 -4.97 15 18 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 19 H 0.03 0.70 7.11 -51.93 -0.37 0.33 15 20 H 0.05 1.15 6.42 -51.93 -0.33 0.82 15 21 H 0.12 2.19 8.06 -52.48 -0.42 1.77 15 22 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 23 H 0.11 1.42 8.06 -52.49 -0.42 1.00 15 24 H 0.39 3.91 8.85 -40.82 -0.36 3.55 15 25 H 0.40 5.15 7.38 -40.82 -0.30 4.85 15 26 H 0.07 1.56 9.07 97.61 0.89 2.45 15 LS Contribution 239.43 15.07 3.61 3.61 Total: -1.00 -31.20 239.43 -6.79 -38.00 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -1.33 Total: 6.04 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -3.04 Total: -21.41 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 1.07 Total: -38.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -2.43 Total: -4.97 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.20 -6.79 -38.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306944034.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.244 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds