Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48501 * 109.47122 * 269.99935 * 3 2 1 5 5 H 1.48501 * 109.47282 * 30.00145 * 3 2 1 6 6 H 1.48496 * 109.46685 * 150.00136 * 3 2 1 7 7 C 1.37872 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00218 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00037 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47567 * 180.02562 * 9 7 2 11 11 C 1.38288 * 120.00061 * 265.00315 * 10 9 7 12 12 C 1.38219 * 120.20136 * 180.02562 * 11 10 9 13 13 C 1.38338 * 120.19922 * 359.96913 * 12 11 10 14 14 C 1.38600 * 120.00468 * 0.02562 * 13 12 11 15 15 N 1.40002 * 120.09607 * 179.97438 * 14 13 12 16 16 C 1.38687 * 120.00566 * 85.23037 * 10 9 7 17 17 S 1.76202 * 120.10052 * 0.02562 * 16 10 9 18 18 H 0.97004 * 119.99786 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47130 * 59.99997 * 9 7 2 20 20 H 1.09003 * 109.46992 * 300.00370 * 9 7 2 21 21 H 1.08005 * 119.90246 * 359.97438 * 11 10 9 22 22 H 1.08000 * 119.90333 * 179.97438 * 12 11 10 23 23 H 1.07999 * 119.99525 * 179.97438 * 13 12 11 24 24 H 0.97001 * 120.00450 * 0.02562 * 15 14 13 25 25 H 0.97005 * 119.99826 * 179.72365 * 15 14 13 26 26 H 1.34502 * 102.99807 * 270.22699 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.3422 -3.2323 1.1940 12 6 4.8039 -4.5351 1.1987 13 6 4.9396 -5.2295 0.0100 14 6 4.6129 -4.6189 -1.1906 15 7 4.7500 -5.3197 -2.3948 16 6 4.1514 -3.3018 -1.1959 17 16 3.7401 -2.5157 -2.7183 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6801 0.8911 20 1 3.8752 -0.6804 -0.8888 21 1 4.2385 -2.6946 2.1250 22 1 5.0594 -5.0125 2.1332 23 1 5.3011 -6.2472 0.0174 24 1 5.0738 -6.2341 -2.3898 25 1 4.5171 -4.8924 -3.2339 26 1 2.4367 -2.8113 -2.8690 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306944034.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = -3.130636 kcal Electronic energy + Delta-G solvation = -11363.386255 eV Core-core repulsion = 9338.761646 eV Total energy + Delta-G solvation = -2024.624609 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.21611 -36.14596 -34.81527 -33.05417 -30.00213 -28.97584 -25.01138 -23.33103 -21.83752 -19.01656 -18.68121 -17.79194 -17.45077 -16.49183 -16.21427 -15.32597 -15.02787 -14.73209 -14.18839 -13.96669 -13.49357 -13.02805 -12.71314 -12.35434 -12.12826 -11.85091 -11.70048 -11.40674 -11.20981 -10.76794 -9.53448 -8.86498 -8.41386 -8.29858 -6.33667 0.22450 0.77602 1.03880 1.38620 1.40168 1.51835 1.95760 2.37268 2.98743 3.02932 3.07580 4.06234 4.25500 4.58740 4.61497 4.77229 5.01725 5.13942 5.26889 5.30230 5.57776 5.64350 5.92978 6.01805 6.23460 6.55971 6.69518 7.05620 7.29357 8.86683 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.039032 B = 0.010894 C = 0.009578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.183685 B = 2569.696105 C = 2922.538922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.504 4.504 8 H 0.018 0.982 9 C 0.012 3.988 10 C 0.021 3.979 11 C -0.209 4.209 12 C -0.038 4.038 13 C -0.222 4.222 14 C 0.256 3.744 15 N -0.859 5.859 16 C -0.217 4.217 17 S -0.114 6.114 18 H 0.267 0.733 19 H 0.032 0.968 20 H 0.045 0.955 21 H 0.121 0.879 22 H 0.157 0.843 23 H 0.157 0.843 24 H 0.411 0.589 25 H 0.405 0.595 26 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -9.353 -1.971 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.542 4.542 8 H 0.036 0.964 9 C -0.026 4.026 10 C 0.018 3.982 11 C -0.231 4.231 12 C -0.056 4.056 13 C -0.246 4.246 14 C 0.145 3.855 15 N -0.401 5.401 16 C -0.334 4.334 17 S 0.044 5.956 18 H 0.075 0.925 19 H 0.050 0.950 20 H 0.063 0.937 21 H 0.139 0.861 22 H 0.175 0.825 23 H 0.175 0.825 24 H 0.242 0.758 25 H 0.237 0.763 26 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 12.404 -8.759 -2.810 15.442 hybrid contribution -1.314 0.014 0.511 1.410 sum 11.090 -8.745 -2.299 14.309 Atomic orbital electron populations 1.70058 1.08309 1.28180 1.52780 1.25895 0.95505 1.03248 0.93940 0.85708 0.79688 0.78196 0.79518 1.18926 1.20885 1.16621 1.20890 0.90376 0.92436 1.50485 0.96385 1.18850 0.94488 0.91027 0.98217 1.20319 0.89062 0.96186 0.92653 1.21022 1.07773 0.97367 0.96906 1.21367 0.92708 0.92625 0.98929 1.20813 1.11471 1.02156 0.90153 1.17912 0.90194 0.88895 0.88521 1.42801 1.74559 1.17291 1.05400 1.20664 1.19462 0.97684 0.95625 1.84848 1.11652 1.74804 1.24322 0.92452 0.94981 0.93652 0.86078 0.82494 0.82539 0.75826 0.76319 0.98905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.46 15 2 C 0.01 0.64 5.47 84.65 0.46 1.10 15 3 Si 0.95 45.02 27.47 68.60 1.88 46.90 15 4 H -0.26 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 6 H -0.24 -10.68 6.54 99.48 0.65 -10.03 15 7 C -0.50 -29.78 9.64 25.60 0.25 -29.54 15 8 H 0.02 1.19 7.98 -2.91 -0.02 1.17 15 9 C 0.01 0.58 3.64 29.10 0.11 0.69 15 10 C 0.02 0.90 5.09 -19.75 -0.10 0.80 15 11 C -0.21 -7.75 9.67 22.28 0.22 -7.54 15 12 C -0.04 -1.07 10.04 22.29 0.22 -0.85 15 13 C -0.22 -5.94 9.89 22.38 0.22 -5.72 15 14 C 0.26 8.03 6.76 38.24 0.26 8.29 15 15 N -0.86 -20.06 9.04 -50.95 -0.46 -20.53 15 16 C -0.22 -8.64 6.12 22.70 0.14 -8.50 15 17 S -0.11 -4.46 22.59 -56.49 -1.28 -5.74 15 18 H 0.27 15.85 8.31 -92.71 -0.77 15.08 15 19 H 0.03 1.53 7.11 -2.39 -0.02 1.52 15 20 H 0.05 2.22 6.42 -2.39 -0.02 2.21 15 21 H 0.12 4.32 8.06 -2.91 -0.02 4.30 15 22 H 0.16 3.18 8.06 -2.91 -0.02 3.16 15 23 H 0.16 2.91 8.06 -2.91 -0.02 2.88 15 24 H 0.41 6.56 8.85 -92.71 -0.82 5.74 15 25 H 0.41 9.54 7.38 -92.70 -0.68 8.85 15 26 H 0.05 2.04 9.07 73.35 0.67 2.71 15 Total: -1.00 -69.93 239.43 2.55 -67.38 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.33 Total: 13.70 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 1.77 Total: -41.26 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -0.16 Total: -80.99 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -1.28 Total: -5.74 kcal Total: -69.93 2.55 -67.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306944034.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.248 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds