Wall clock time and date at job start Mon Mar 30 2020 02:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39759 * 120.56431 * 58.53705 * 3 2 1 5 5 F 1.35099 * 119.99837 * 0.02562 * 4 3 2 6 6 C 1.38246 * 120.01049 * 180.32542 * 4 3 2 7 7 C 1.38881 * 121.23181 * 359.66241 * 6 4 3 8 8 F 1.35102 * 119.41468 * 180.02562 * 7 6 4 9 9 C 1.37761 * 121.17165 * 0.02562 * 7 6 4 10 10 C 1.40736 * 119.88554 * 0.02562 * 9 7 6 11 11 C 1.40804 * 120.58517 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00014 * 205.26373 * 11 10 9 13 13 C 1.40238 * 120.00374 * 25.25518 * 11 10 9 14 14 N 1.30664 * 119.99792 * 26.31145 * 13 11 10 15 15 Si 1.86793 * 120.00389 * 206.31040 * 13 11 10 16 16 H 1.48496 * 109.47395 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47073 * 300.00311 * 15 13 11 18 18 H 1.48506 * 109.47091 * 59.99967 * 15 13 11 19 19 H 1.08000 * 119.39024 * 179.68819 * 6 4 3 20 20 H 1.08002 * 120.05498 * 180.02562 * 9 7 6 21 21 H 0.97000 * 119.99668 * 5.89135 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2790 -0.6272 -1.0265 5 9 2.6153 -1.2411 -2.0303 6 6 4.6614 -0.6254 -1.0115 7 6 5.3697 -0.0015 0.0072 8 9 6.7204 -0.0218 -0.0149 9 6 4.7195 0.6375 1.0400 10 6 3.3128 0.6643 1.0732 11 6 2.6331 1.3137 2.1215 12 1 1.6302 1.0111 2.3841 13 6 3.2585 2.3534 2.8248 14 7 4.1907 3.0642 2.2478 15 14 2.7589 2.7221 4.5865 16 1 3.5632 3.8592 5.1016 17 1 1.3175 3.0769 4.6283 18 1 2.9982 1.5236 5.4301 19 1 5.2006 -1.1179 -1.8071 20 1 5.2883 1.1172 1.8228 21 1 4.3909 2.9303 1.3081 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307052473.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:08 Heat of formation + Delta-G solvation = -77.231208 kcal Electronic energy + Delta-G solvation = -12703.013281 eV Core-core repulsion = 9985.501949 eV Total energy + Delta-G solvation = -2717.511332 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 209.035 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.99622 -49.84890 -39.48172 -37.16454 -36.00630 -31.81095 -31.09566 -27.81377 -24.33621 -23.44328 -20.53271 -19.56256 -18.31604 -18.03785 -16.86920 -16.63455 -16.22724 -15.91937 -15.60707 -15.11651 -14.95904 -14.49320 -14.32710 -13.92656 -13.27232 -12.94469 -12.90368 -12.47808 -12.27254 -11.99255 -11.72917 -11.11665 -9.92470 -9.72865 -9.41521 -6.95261 -0.09882 0.48917 1.51216 1.55368 1.80964 1.82590 1.98842 2.21525 2.45169 3.02923 3.10410 3.30963 3.63573 4.18834 4.31186 4.50584 5.00786 5.07654 5.21115 5.34479 5.42562 5.64660 5.87710 6.24935 6.36892 6.72279 7.67017 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.027633 B = 0.013517 C = 0.009406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.034991 B = 2070.935727 C = 2976.004022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.301 3.699 3 C -0.244 4.244 4 C 0.220 3.780 5 F -0.141 7.141 6 C -0.321 4.321 7 C 0.184 3.816 8 F -0.143 7.143 9 C -0.266 4.266 10 C 0.140 3.860 11 C -0.473 4.473 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.758 5.758 15 Si 1.113 2.887 16 H -0.262 1.262 17 H -0.262 1.262 18 H -0.254 1.254 19 H 0.152 0.848 20 H 0.126 0.874 21 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -1.288 1.293 4.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.009 4.009 3 C -0.251 4.251 4 C 0.198 3.802 5 F -0.119 7.119 6 C -0.341 4.341 7 C 0.163 3.837 8 F -0.121 7.121 9 C -0.286 4.286 10 C 0.134 3.866 11 C -0.498 4.498 12 H 0.103 0.897 13 C -0.213 4.213 14 N -0.377 5.377 15 Si 0.929 3.071 16 H -0.186 1.186 17 H -0.187 1.187 18 H -0.178 1.178 19 H 0.169 0.831 20 H 0.143 0.857 21 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.272 -0.320 2.471 3.372 hybrid contribution 0.208 -1.120 -1.841 2.165 sum 2.479 -1.440 0.630 2.936 Atomic orbital electron populations 1.81014 1.12686 1.13920 1.10928 1.25470 0.92484 0.91278 0.91643 1.16859 0.83880 1.22323 1.02074 1.16974 0.89427 0.90761 0.83031 1.91441 1.81266 1.80432 1.58800 1.20046 0.91342 1.17143 1.05599 1.17138 0.75854 0.96074 0.94613 1.91435 1.29618 1.94656 1.96419 1.21014 0.93946 1.11774 1.01884 1.18079 0.90632 0.89067 0.88815 1.21090 1.03294 1.14239 1.11182 0.89675 1.28688 0.91147 0.91291 1.10127 1.70509 1.20817 1.30674 1.15714 0.83025 0.77693 0.78673 0.67748 1.18571 1.18661 1.17843 0.83063 0.85665 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.24 18.54 19.00 0.35 -23.89 14 2 C 0.30 14.10 13.96 88.33 1.23 15.33 14 3 C -0.24 -11.01 5.95 -19.50 -0.12 -11.13 14 4 C 0.22 9.00 7.27 22.64 0.16 9.17 14 5 F -0.14 -5.54 16.82 44.97 0.76 -4.78 14 6 C -0.32 -12.08 9.93 22.43 0.22 -11.85 14 7 C 0.18 7.27 7.25 22.31 0.16 7.43 14 8 F -0.14 -5.30 17.24 44.97 0.78 -4.53 14 9 C -0.27 -11.48 7.95 22.77 0.18 -11.30 14 10 C 0.14 6.43 5.46 -19.88 -0.11 6.32 14 11 C -0.47 -21.77 8.50 23.38 0.20 -21.58 14 12 H 0.09 3.99 7.46 -2.91 -0.02 3.97 14 13 C 0.01 0.49 4.93 85.35 0.42 0.91 14 14 N -0.76 -33.88 12.32 21.88 0.27 -33.61 14 15 Si 1.11 36.02 30.01 68.60 2.06 38.08 14 16 H -0.26 -8.24 7.11 99.48 0.71 -7.53 14 17 H -0.26 -8.17 7.11 99.48 0.71 -7.46 14 18 H -0.25 -7.72 7.11 99.48 0.71 -7.02 14 19 H 0.15 4.85 8.06 -2.91 -0.02 4.83 14 20 H 0.13 5.49 6.54 -2.91 -0.02 5.47 14 21 H 0.30 13.74 6.77 -92.71 -0.63 13.12 14 Total: -1.00 -48.04 216.27 8.00 -40.04 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.43 Total: 5.38 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 2.36 Total: -16.70 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.62 Total: -57.50 kcal Atomic # 9 Polarization: -10.84 SS G_CDS: 1.53 Total: -9.31 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.06 Total: 38.08 kcal Total: -48.04 8.00 -40.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307052473.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.190 kcal (2) G-P(sol) polarization free energy of solvation -48.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds