Wall clock time and date at job start Mon Mar 30 2020 02:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29514 * 121.48421 * 2 1 4 4 S 1.69453 * 108.07571 * 180.19915 * 3 2 1 5 5 C 1.72019 * 96.09119 * 359.75655 * 4 3 2 6 6 N 1.37802 * 127.36938 * 179.97438 * 5 4 3 7 7 C 1.36795 * 119.99746 * 0.03159 * 6 5 4 8 8 H 1.08004 * 120.00422 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00142 * 179.97438 * 7 6 5 10 10 N 1.31560 * 120.00069 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00294 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47271 * 60.00043 * 11 9 7 13 13 H 1.48505 * 109.47220 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47318 * 299.99873 * 11 9 7 15 15 C 1.39204 * 121.48191 * 179.75602 * 2 1 3 16 16 C 1.43205 * 123.23210 * 0.04502 * 15 2 1 17 17 N 3.52852 * 83.98252 * 179.78249 * 2 1 3 18 18 H 1.09000 * 109.47614 * 270.23788 * 1 2 3 19 19 H 1.09003 * 109.47307 * 30.24228 * 1 2 3 20 20 H 1.09000 * 109.47364 * 150.23867 * 1 2 3 21 21 H 0.96999 * 120.00441 * 180.02562 * 6 5 4 22 22 H 0.96993 * 120.00475 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1834 1.1045 0.0000 4 16 3.8317 0.7115 -0.0056 5 6 3.6126 -0.9947 -0.0008 6 7 4.5923 -1.9637 -0.0029 7 6 5.9117 -1.6024 -0.0089 8 1 6.1855 -0.5576 -0.0115 9 6 6.8986 -2.5784 -0.0104 10 7 6.5652 -3.8510 -0.0057 11 14 8.7002 -2.0850 -0.0179 12 1 8.9971 -1.2767 1.1920 13 1 9.5474 -3.3047 -0.0191 14 1 8.9884 -1.2815 -1.2330 15 6 2.2339 -1.1871 0.0051 16 6 1.6222 -2.4820 0.0096 17 7 1.1370 -3.5090 0.0133 18 1 -0.3634 0.0043 1.0276 19 1 -0.3634 0.8878 -0.5176 20 1 -0.3634 -0.8921 -0.5101 21 1 4.3465 -2.9020 -0.0001 22 1 7.2547 -4.5331 -0.0072 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307090735.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:30 Heat of formation + Delta-G solvation = 28.493631 kcal Electronic energy + Delta-G solvation = -10862.446843 eV Core-core repulsion = 8735.653222 eV Total energy + Delta-G solvation = -2126.793621 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.032 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.95930 -37.90759 -36.90285 -34.41217 -30.81476 -30.25909 -27.05503 -24.20158 -21.53236 -20.42284 -19.64613 -17.60990 -17.06642 -16.08920 -15.80527 -15.67289 -14.48146 -14.10231 -13.94470 -13.80851 -13.73207 -13.41781 -13.08059 -12.94628 -12.92591 -12.33134 -12.17120 -11.74118 -11.04790 -10.99575 -9.24481 -9.09885 -8.94440 -6.18617 0.25658 0.69772 1.19752 1.36446 1.43004 1.52622 1.55280 1.98310 2.09426 2.62996 2.86842 2.88640 3.65103 4.07797 4.60427 4.78599 4.81749 4.86326 4.97094 5.24536 5.46320 6.13667 6.25348 6.73239 6.83714 6.90364 8.18334 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.042331 B = 0.010214 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.300593 B = 2740.707695 C = 3386.860098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.214 3.786 3 N -0.548 5.548 4 S 0.203 5.797 5 C 0.094 3.906 6 N -0.452 5.452 7 C -0.328 4.328 8 H 0.131 0.869 9 C 0.001 3.999 10 N -0.883 5.883 11 Si 1.013 2.987 12 H -0.253 1.253 13 H -0.274 1.274 14 H -0.253 1.253 15 C -0.340 4.340 16 C 0.317 3.683 17 N -0.518 5.518 18 H 0.094 0.906 19 H 0.094 0.906 20 H 0.071 0.929 21 H 0.402 0.598 22 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 6.110 0.023 6.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 N -0.370 5.370 4 S 0.342 5.658 5 C -0.163 4.163 6 N -0.048 5.048 7 C -0.461 4.461 8 H 0.148 0.852 9 C -0.208 4.208 10 N -0.515 5.515 11 Si 0.833 3.167 12 H -0.177 1.177 13 H -0.198 1.198 14 H -0.177 1.177 15 C -0.367 4.367 16 C 0.006 3.994 17 N -0.201 5.201 18 H 0.112 0.888 19 H 0.113 0.887 20 H 0.089 0.911 21 H 0.238 0.762 22 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.678 6.296 0.023 6.333 hybrid contribution -0.019 -2.100 0.004 2.100 sum 0.659 4.196 0.028 4.247 Atomic orbital electron populations 1.20612 0.85536 1.03848 1.04277 1.20809 0.98577 0.86326 0.90501 1.76228 0.98910 1.24560 1.37300 1.83383 1.11486 0.91239 1.79693 1.22943 0.90828 0.98184 1.04306 1.40520 1.04312 1.06619 1.53333 1.20585 0.79743 0.96758 1.49040 0.85171 1.26682 1.06703 0.94089 0.93294 1.69747 1.38805 1.01396 1.41521 0.84653 0.72885 0.78551 0.80659 1.17688 1.19838 1.17696 1.15296 0.89225 0.88316 1.43833 1.24937 0.92231 0.91724 0.90513 1.81115 1.09768 1.11425 1.17745 0.88755 0.88728 0.91063 0.76167 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.28 9.95 71.23 0.71 -1.57 14 2 C 0.21 7.97 6.75 43.13 0.29 8.26 14 3 N -0.55 -21.17 11.95 -50.64 -0.61 -21.78 14 4 S 0.20 7.88 22.42 -56.49 -1.27 6.61 14 5 C 0.09 4.05 7.24 83.99 0.61 4.66 14 6 N -0.45 -20.79 5.39 -187.63 -1.01 -21.80 14 7 C -0.33 -14.68 9.73 84.05 0.82 -13.87 14 8 H 0.13 5.40 6.88 -2.91 -0.02 5.38 14 9 C 0.00 0.03 5.50 84.87 0.47 0.50 14 10 N -0.88 -41.68 13.05 21.65 0.28 -41.40 14 11 Si 1.01 33.46 29.55 68.60 2.03 35.49 14 12 H -0.25 -7.99 7.11 99.48 0.71 -7.29 14 13 H -0.27 -8.92 7.11 99.48 0.71 -8.21 14 14 H -0.25 -8.00 7.11 99.48 0.71 -7.29 14 15 C -0.34 -14.15 5.76 -21.57 -0.12 -14.27 14 16 C 0.32 13.63 14.05 88.33 1.24 14.87 14 17 N -0.52 -23.25 18.54 19.00 0.35 -22.90 14 18 H 0.09 2.33 8.14 -2.39 -0.02 2.31 14 19 H 0.09 2.28 8.14 -2.39 -0.02 2.26 14 20 H 0.07 1.98 7.39 -2.39 -0.02 1.96 14 21 H 0.40 19.65 7.60 -92.71 -0.70 18.95 14 22 H 0.30 12.95 8.31 -92.71 -0.77 12.18 14 Total: -1.00 -51.29 227.67 4.36 -46.93 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.57 Total: 20.26 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.01 Total: -1.42 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -0.98 Total: -107.87 kcal Atomic # 14 Polarization: 33.46 SS G_CDS: 2.03 Total: 35.49 kcal Atomic # 16 Polarization: 7.88 SS G_CDS: -1.27 Total: 6.61 kcal Total: -51.29 4.36 -46.93 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307090735.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.428 kcal (2) G-P(sol) polarization free energy of solvation -51.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds