Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86789 * 119.99857 * 2 1 4 4 H 1.48503 * 109.47675 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.47162 * 30.00211 * 3 2 1 6 6 H 1.48503 * 109.47180 * 149.99904 * 3 2 1 7 7 C 1.39081 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99568 * 179.97438 * 7 2 1 9 9 N 1.36819 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99964 * 179.97438 * 9 7 2 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 C 1.47770 * 119.99858 * 180.27762 * 10 9 7 13 13 C 1.39517 * 120.03194 * 179.45160 * 12 10 9 14 14 N 1.32032 * 119.94837 * 179.77706 * 13 12 10 15 15 C 1.32632 * 120.01455 * 0.49638 * 14 13 12 16 16 O 1.35500 * 119.96088 * 179.70952 * 15 14 13 17 17 C 1.39568 * 120.06936 * 359.73588 * 15 14 13 18 18 N 1.31574 * 120.05515 * 0.02562 * 17 15 14 19 19 H 0.96996 * 120.00293 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00299 * 0.02562 * 9 7 2 21 21 H 1.08003 * 120.02729 * 0.02562 * 13 12 10 22 22 H 0.96696 * 113.99778 * 270.02131 * 16 15 14 23 23 H 1.08002 * 119.97143 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4949 2.0465 -1.4001 5 1 1.4448 2.6526 0.7001 6 1 3.5449 1.4401 0.7001 7 6 2.0088 -1.2045 -0.0005 8 1 3.0887 -1.2044 -0.0010 9 7 1.3247 -2.3894 -0.0005 10 6 1.9986 -3.5566 -0.0016 11 8 3.2146 -3.5566 -0.0021 12 6 1.2598 -4.8363 -0.0078 13 6 1.9567 -6.0449 -0.0204 14 7 1.2949 -7.1873 -0.0215 15 6 -0.0315 -7.1858 -0.0205 16 8 -0.7096 -8.3589 -0.0276 17 6 -0.7293 -5.9771 -0.0128 18 7 -0.0726 -4.8370 -0.0070 19 1 -0.4850 0.8400 0.0004 20 1 0.3547 -2.3894 -0.0005 21 1 3.0367 -6.0460 -0.0253 22 1 -0.9067 -8.6938 -0.9130 23 1 -1.8094 -5.9777 -0.0116 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307425505.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = -57.087897 kcal Electronic energy + Delta-G solvation = -12854.164689 eV Core-core repulsion = 10280.907104 eV Total energy + Delta-G solvation = -2573.257586 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.30146 -40.00062 -38.35263 -36.21952 -35.28976 -33.40226 -31.78185 -27.54157 -25.87319 -25.33341 -21.96443 -20.23032 -19.97624 -19.23346 -18.13791 -17.19288 -16.90804 -16.00966 -15.95937 -15.72272 -15.25204 -14.54244 -14.20678 -13.62758 -13.06118 -12.96911 -12.83305 -12.51380 -12.36051 -12.10783 -11.62743 -10.91170 -10.30435 -10.15618 -10.05695 -8.61727 -6.05011 -0.71842 -0.05874 1.37869 1.43060 1.57223 1.82585 2.21403 2.32758 2.65318 2.75205 3.17520 3.20437 3.38628 3.81802 4.02314 4.31562 4.51316 5.14821 5.29333 5.81608 5.98059 6.38001 6.56059 6.59588 6.93315 7.35125 7.90157 8.54214 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.071642 B = 0.007317 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.739565 B = 3825.541978 C = 4203.833663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.008 4.008 3 Si 1.007 2.993 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.337 4.337 8 H 0.094 0.906 9 N -0.525 5.525 10 C 0.464 3.536 11 O -0.627 6.627 12 C 0.029 3.971 13 C 0.120 3.880 14 N -0.473 5.473 15 C 0.276 3.724 16 O -0.471 6.471 17 C 0.056 3.944 18 N -0.427 5.427 19 H 0.286 0.714 20 H 0.404 0.596 21 H 0.185 0.815 22 H 0.429 0.571 23 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -9.263 -1.896 10.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.212 4.212 3 Si 0.829 3.171 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.112 0.888 9 N -0.157 5.157 10 C 0.252 3.748 11 O -0.516 6.516 12 C -0.109 4.109 13 C -0.040 4.040 14 N -0.198 5.198 15 C 0.091 3.909 16 O -0.281 6.281 17 C -0.110 4.110 18 N -0.146 5.146 19 H 0.096 0.904 20 H 0.240 0.760 21 H 0.202 0.798 22 H 0.292 0.708 23 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.129 -9.059 -1.309 10.041 hybrid contribution -0.204 0.540 -0.436 0.723 sum -4.333 -8.519 -1.745 9.715 Atomic orbital electron populations 1.69679 1.07387 1.30416 1.46227 1.26396 0.96620 1.03225 0.94910 0.84729 0.77933 0.75412 0.79075 1.19076 1.19160 1.19124 1.20000 0.93540 0.83413 1.49737 0.88812 1.41918 1.10253 1.04644 1.58905 1.17559 0.86806 0.83282 0.87185 1.90585 1.13841 1.87004 1.60156 1.22096 0.90913 0.95878 1.01999 1.23455 1.02157 0.85278 0.93079 1.68066 1.09861 1.29854 1.11984 1.20549 0.87534 0.87880 0.94895 1.84696 1.72412 1.34723 1.36233 1.24511 1.03628 0.86111 0.96780 1.68451 1.07644 1.30781 1.07723 0.90391 0.76044 0.79839 0.70827 0.76719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.68 13.05 21.69 0.28 -47.40 14 2 C -0.01 -0.44 5.50 84.97 0.47 0.03 14 3 Si 1.01 40.98 29.55 68.60 2.03 43.01 14 4 H -0.27 -10.41 7.11 99.48 0.71 -9.71 14 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 14 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 14 7 C -0.34 -19.01 9.68 84.12 0.81 -18.19 14 8 H 0.09 5.49 7.15 -2.91 -0.02 5.47 14 9 N -0.53 -28.32 5.27 -309.71 -1.63 -29.95 14 10 C 0.46 23.78 7.75 86.76 0.67 24.46 14 11 O -0.63 -35.21 15.91 -4.01 -0.06 -35.27 14 12 C 0.03 1.21 6.74 41.76 0.28 1.49 14 13 C 0.12 4.33 10.77 84.97 0.91 5.24 14 14 N -0.47 -14.98 10.51 -306.98 -3.23 -18.21 14 15 C 0.28 7.22 7.78 84.89 0.66 7.88 14 16 O -0.47 -8.73 13.56 -88.02 -1.19 -9.92 14 17 C 0.06 1.51 11.18 85.05 0.95 2.46 14 18 N -0.43 -15.73 9.70 -183.96 -1.78 -17.52 14 19 H 0.29 13.93 8.31 -92.71 -0.77 13.16 14 20 H 0.40 21.39 7.23 -92.71 -0.67 20.72 14 21 H 0.18 6.42 7.64 -2.91 -0.02 6.39 14 22 H 0.43 3.03 9.06 -74.06 -0.67 2.36 14 23 H 0.22 3.80 8.06 -2.91 -0.02 3.78 14 Total: -1.00 -68.48 225.71 -0.89 -69.37 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.06 Total: 22.54 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 4.76 Total: 23.36 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -6.36 Total: -113.08 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.26 Total: -45.20 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -68.48 -0.89 -69.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307425505.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.279 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds