Wall clock time and date at job start Mon Mar 30 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47301 * 2 1 4 4 C 1.48087 * 110.99802 * 56.48834 * 3 2 1 5 5 C 1.51670 * 105.34778 * 145.34192 * 4 3 2 6 6 C 1.30624 * 109.37040 * 342.70682 * 5 4 3 7 7 C 1.51068 * 109.95013 * 180.02562 * 6 5 4 8 8 N 1.46779 * 107.28146 * 359.97438 * 7 6 5 9 9 C 1.36936 * 127.23418 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99682 * 354.39930 * 9 8 7 11 11 C 1.38807 * 119.99969 * 174.39366 * 9 8 7 12 12 N 1.31621 * 120.00154 * 6.70802 * 11 9 8 13 13 Si 1.86804 * 119.99824 * 186.70383 * 11 9 8 14 14 H 1.48501 * 109.46838 * 94.98887 * 13 11 9 15 15 H 1.48500 * 109.46851 * 214.98784 * 13 11 9 16 16 H 1.48496 * 109.47148 * 334.98727 * 13 11 9 17 17 C 1.46774 * 105.53131 * 0.02562 * 8 7 6 18 18 C 1.48086 * 111.00247 * 170.00137 * 3 2 1 19 19 H 1.08999 * 109.46931 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47075 * 299.99953 * 1 2 3 21 21 H 1.09004 * 109.47141 * 59.99911 * 1 2 3 22 22 H 1.09006 * 109.46912 * 240.00320 * 2 1 3 23 23 H 1.08995 * 109.47282 * 120.00373 * 2 1 3 24 24 H 1.09001 * 110.26922 * 264.30799 * 4 3 2 25 25 H 1.09002 * 110.26901 * 26.37202 * 4 3 2 26 26 H 1.08994 * 109.88015 * 119.41594 * 7 6 5 27 27 H 1.08998 * 109.87736 * 240.42540 * 7 6 5 28 28 H 0.96996 * 119.99529 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.87940 * 119.41720 * 17 8 7 30 30 H 1.08994 * 109.88098 * 240.58351 * 17 8 7 31 31 H 1.09001 * 110.26688 * 333.62755 * 18 3 2 32 32 H 1.09001 * 110.26660 * 95.68844 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4770 2.1397 1.1527 5 6 2.5825 3.0927 1.5650 6 6 3.7141 2.6926 1.0494 7 6 4.8254 3.6331 1.4526 8 7 4.2287 4.6783 2.2928 9 6 4.8696 5.7379 2.8774 10 1 5.9447 5.8199 2.8148 11 6 4.1376 6.7065 3.5501 12 7 2.8458 6.5409 3.7408 13 14 4.9857 8.2451 4.1849 14 1 4.8434 9.3360 3.1875 15 1 4.3615 8.6614 5.4664 16 1 6.4265 7.9608 4.4055 17 6 2.8007 4.3491 2.3748 18 6 3.4803 1.4315 0.2400 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 0.5893 2.6975 0.8546 25 1 1.2397 1.4600 1.9711 26 1 5.5833 3.0906 2.0176 27 1 5.2736 4.0794 0.5649 28 1 2.3343 7.2180 4.2106 29 1 2.5197 4.1743 3.4134 30 1 2.2080 5.1644 1.9603 31 1 3.7981 0.5555 0.8056 32 1 4.0170 1.4856 -0.7071 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307440180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:36 Heat of formation + Delta-G solvation = 78.100798 kcal Electronic energy + Delta-G solvation = -13665.858489 eV Core-core repulsion = 11435.555225 eV Total energy + Delta-G solvation = -2230.303264 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.75083 -36.50006 -33.08293 -31.27301 -29.06152 -28.25969 -25.91249 -25.29400 -22.80430 -20.84478 -20.08011 -17.53518 -16.68565 -15.63904 -15.42185 -14.58194 -14.13151 -13.69790 -13.46531 -13.15495 -12.65468 -12.22078 -11.88831 -11.71244 -11.37017 -11.25310 -11.03980 -10.97956 -10.82316 -10.54102 -10.26825 -10.05881 -9.74663 -9.09546 -8.55269 -7.72890 -6.75024 -5.78101 -3.09831 2.77255 3.40365 3.44865 3.47322 4.06760 4.43940 4.64268 4.95574 5.09284 5.20073 5.41265 5.46578 5.54743 5.67394 5.73645 5.85553 5.89290 5.97569 6.10924 6.17632 6.24648 6.49173 6.66056 6.81063 7.09025 7.15941 7.32975 7.43930 7.64615 7.80444 8.17336 9.15474 9.75699 10.47168 11.36952 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.076062 B = 0.007208 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.032914 B = 3883.379995 C = 4195.929321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.039 3.961 3 N -0.504 5.504 4 C 0.091 3.909 5 C -0.170 4.170 6 C -0.203 4.203 7 C 0.197 3.803 8 N -0.601 5.601 9 C -0.224 4.224 10 H 0.084 0.916 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.916 3.084 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.226 3.774 18 C 0.096 3.904 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.028 0.972 27 H 0.032 0.968 28 H 0.255 0.745 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -11.186 -5.635 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.089 4.089 3 N -0.228 5.228 4 C -0.037 4.037 5 C -0.172 4.172 6 C -0.204 4.204 7 C 0.070 3.930 8 N -0.327 5.327 9 C -0.351 4.351 10 H 0.102 0.898 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.746 3.254 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.101 3.899 18 C -0.032 4.032 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.095 0.905 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.946 -10.768 -6.026 12.686 hybrid contribution 0.567 0.355 1.095 1.284 sum -2.378 -10.413 -4.930 11.764 Atomic orbital electron populations 1.21832 0.94705 1.01597 1.02842 1.22334 0.96253 0.89404 1.00896 1.65717 1.04936 1.12193 1.39965 1.21437 0.96876 0.94125 0.91212 1.24098 0.95304 0.98453 0.99297 1.23233 0.98193 0.97482 1.01512 1.19399 0.91904 0.88006 0.93646 1.44062 1.03948 1.27383 1.57336 1.18961 0.91163 0.97197 1.27807 0.89835 1.24858 0.95877 0.98837 1.00771 1.69952 1.05898 1.34792 1.46071 0.86027 0.78380 0.83052 0.77895 1.21459 1.21673 1.20501 1.19411 0.86355 0.88248 0.95912 1.21372 0.88964 0.94197 0.98631 0.92315 0.92343 0.91745 0.90520 0.94622 0.89719 0.92734 0.95414 0.95081 0.93526 0.92902 0.92223 0.93102 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.74 37.16 0.36 -1.22 16 2 C 0.04 0.47 5.56 -3.82 -0.02 0.45 16 3 N -0.50 -7.82 5.67 -234.25 -1.33 -9.14 16 4 C 0.09 1.54 5.32 -3.84 -0.02 1.52 16 5 C -0.17 -3.61 7.17 -100.31 -0.72 -4.33 16 6 C -0.20 -4.12 7.17 -100.31 -0.72 -4.84 16 7 C 0.20 4.48 7.32 -4.86 -0.04 4.44 16 8 N -0.60 -16.30 3.43 -175.12 -0.60 -16.90 16 9 C -0.22 -6.41 10.35 -15.06 -0.16 -6.56 16 10 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 11 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 12 N -0.92 -27.38 10.61 55.49 0.59 -26.80 16 13 Si 0.92 22.20 29.56 -169.99 -5.02 17.18 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 C 0.23 5.83 5.46 -4.87 -0.03 5.80 16 18 C 0.10 1.55 6.66 -3.85 -0.03 1.52 16 19 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 20 H 0.06 0.63 6.85 -51.93 -0.36 0.28 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.42 7.82 -51.93 -0.41 0.01 16 24 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 25 H 0.05 0.86 7.39 -51.93 -0.38 0.48 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.05 1.48 7.67 -51.93 -0.40 1.08 16 30 H 0.06 1.69 7.43 -51.93 -0.39 1.30 16 31 H 0.05 0.75 7.59 -51.93 -0.39 0.35 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 258.71 15.07 3.90 3.90 Total: -1.00 -30.61 258.71 -8.75 -39.37 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.83 Total: -4.10 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.46 Total: -3.50 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -1.34 Total: -52.84 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.61 -8.75 -39.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307440180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.468 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds