Wall clock time and date at job start Mon Mar 30 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47301 * 2 1 4 4 C 1.48087 * 110.99802 * 56.48834 * 3 2 1 5 5 C 1.51670 * 105.34778 * 145.34192 * 4 3 2 6 6 C 1.30624 * 109.37040 * 342.70682 * 5 4 3 7 7 C 1.51068 * 109.95013 * 180.02562 * 6 5 4 8 8 N 1.46779 * 107.28146 * 359.97438 * 7 6 5 9 9 C 1.36936 * 127.23418 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99682 * 354.39930 * 9 8 7 11 11 C 1.38807 * 119.99969 * 174.39366 * 9 8 7 12 12 N 1.31621 * 120.00154 * 6.70802 * 11 9 8 13 13 Si 1.86804 * 119.99824 * 186.70383 * 11 9 8 14 14 H 1.48501 * 109.46838 * 94.98887 * 13 11 9 15 15 H 1.48500 * 109.46851 * 214.98784 * 13 11 9 16 16 H 1.48496 * 109.47148 * 334.98727 * 13 11 9 17 17 C 1.46774 * 105.53131 * 0.02562 * 8 7 6 18 18 C 1.48086 * 111.00247 * 170.00137 * 3 2 1 19 19 H 1.08999 * 109.46931 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47075 * 299.99953 * 1 2 3 21 21 H 1.09004 * 109.47141 * 59.99911 * 1 2 3 22 22 H 1.09006 * 109.46912 * 240.00320 * 2 1 3 23 23 H 1.08995 * 109.47282 * 120.00373 * 2 1 3 24 24 H 1.09001 * 110.26922 * 264.30799 * 4 3 2 25 25 H 1.09002 * 110.26901 * 26.37202 * 4 3 2 26 26 H 1.08994 * 109.88015 * 119.41594 * 7 6 5 27 27 H 1.08998 * 109.87736 * 240.42540 * 7 6 5 28 28 H 0.96996 * 119.99529 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.87940 * 119.41720 * 17 8 7 30 30 H 1.08994 * 109.88098 * 240.58351 * 17 8 7 31 31 H 1.09001 * 110.26688 * 333.62755 * 18 3 2 32 32 H 1.09001 * 110.26660 * 95.68844 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4770 2.1397 1.1527 5 6 2.5825 3.0927 1.5650 6 6 3.7141 2.6926 1.0494 7 6 4.8254 3.6331 1.4526 8 7 4.2287 4.6783 2.2928 9 6 4.8696 5.7379 2.8774 10 1 5.9447 5.8199 2.8148 11 6 4.1376 6.7065 3.5501 12 7 2.8458 6.5409 3.7408 13 14 4.9857 8.2451 4.1849 14 1 4.8434 9.3360 3.1875 15 1 4.3615 8.6614 5.4664 16 1 6.4265 7.9608 4.4055 17 6 2.8007 4.3491 2.3748 18 6 3.4803 1.4315 0.2400 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 0.5893 2.6975 0.8546 25 1 1.2397 1.4600 1.9711 26 1 5.5833 3.0906 2.0176 27 1 5.2736 4.0794 0.5649 28 1 2.3343 7.2180 4.2106 29 1 2.5197 4.1743 3.4134 30 1 2.2080 5.1644 1.9603 31 1 3.7981 0.5555 0.8056 32 1 4.0170 1.4856 -0.7071 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307440180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:36 Heat of formation + Delta-G solvation = 57.092987 kcal Electronic energy + Delta-G solvation = -13666.769456 eV Core-core repulsion = 11435.555225 eV Total energy + Delta-G solvation = -2231.214231 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.24027 -38.13066 -34.81714 -32.91504 -30.60684 -29.86000 -27.62351 -27.00915 -24.30575 -22.25783 -21.64122 -19.26389 -18.68172 -17.04097 -16.73981 -16.37500 -15.77899 -15.42489 -14.91500 -14.51863 -14.00994 -13.72580 -13.45459 -13.18340 -13.13333 -12.78797 -12.66361 -12.33352 -12.22599 -12.10175 -11.94375 -11.85474 -11.84646 -11.03315 -10.09687 -9.30615 -8.79704 -7.96120 -5.32514 1.12872 1.45155 1.48761 1.57766 2.41989 2.90259 3.12770 3.26249 3.31792 4.08398 4.16024 4.21358 4.28473 4.41368 4.55585 4.61068 4.65347 4.71638 4.83320 4.87817 4.95472 5.13327 5.17156 5.27730 5.31914 5.47811 5.49498 5.67399 5.98767 6.05006 6.07727 6.97287 7.62184 8.34118 9.18469 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.076062 B = 0.007208 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.032914 B = 3883.379995 C = 4195.929321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 N -0.511 5.511 4 C 0.104 3.896 5 C -0.196 4.196 6 C -0.189 4.189 7 C 0.186 3.814 8 N -0.625 5.625 9 C -0.247 4.247 10 H 0.092 0.908 11 C -0.064 4.064 12 N -0.952 5.952 13 Si 0.990 3.010 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.263 1.263 17 C 0.237 3.763 18 C 0.104 3.896 19 H 0.081 0.919 20 H 0.049 0.951 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.251 0.749 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -12.779 -6.620 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 N -0.235 5.235 4 C -0.024 4.024 5 C -0.198 4.198 6 C -0.190 4.190 7 C 0.061 3.939 8 N -0.352 5.352 9 C -0.374 4.374 10 H 0.110 0.890 11 C -0.257 4.257 12 N -0.600 5.600 13 Si 0.817 3.183 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.187 1.187 17 C 0.111 3.889 18 C -0.024 4.024 19 H 0.100 0.900 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.114 0.886 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.312 -12.395 -7.032 14.437 hybrid contribution 0.414 0.817 1.384 1.660 sum -1.898 -11.578 -5.648 13.021 Atomic orbital electron populations 1.21829 0.93718 1.02968 1.02262 1.22499 0.97117 0.87279 1.02166 1.65766 1.04427 1.14443 1.38858 1.21377 0.95296 0.93491 0.92235 1.23993 0.98137 0.97762 0.99872 1.23551 0.96333 0.98312 1.00813 1.19571 0.93058 0.87875 0.93404 1.44387 1.04689 1.28170 1.57947 1.19408 0.91877 0.98090 1.28051 0.89025 1.25831 0.96639 1.02004 1.01249 1.70179 1.07468 1.35544 1.46794 0.84896 0.77998 0.78538 0.76878 1.21127 1.21773 1.18746 1.18997 0.85635 0.89611 0.94627 1.21464 0.89696 0.92241 0.98950 0.90005 0.93154 0.92125 0.88568 0.93870 0.89641 0.91407 0.94253 0.94359 0.93944 0.96555 0.96203 0.90783 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.74 71.98 0.70 -1.95 16 2 C 0.04 0.74 5.56 86.31 0.48 1.22 16 3 N -0.51 -14.29 5.67 -895.04 -5.07 -19.36 16 4 C 0.10 3.38 5.32 85.64 0.46 3.83 16 5 C -0.20 -8.38 7.17 -15.68 -0.11 -8.49 16 6 C -0.19 -7.43 7.17 -15.68 -0.11 -7.54 16 7 C 0.19 8.43 7.32 85.70 0.63 9.06 16 8 N -0.63 -34.90 3.43 -707.95 -2.43 -37.33 16 9 C -0.25 -14.41 10.35 84.03 0.87 -13.54 16 10 H 0.09 5.03 7.84 -2.91 -0.02 5.01 16 11 C -0.06 -3.74 5.49 84.86 0.47 -3.27 16 12 N -0.95 -59.01 10.61 21.65 0.23 -58.78 16 13 Si 0.99 46.29 29.56 68.60 2.03 48.32 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 15 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 17 C 0.24 12.86 5.46 85.70 0.47 13.33 16 18 C 0.10 2.99 6.66 85.64 0.57 3.56 16 19 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 20 H 0.05 0.97 6.85 -2.39 -0.02 0.95 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.07 2.01 7.39 -2.39 -0.02 2.00 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.02 0.98 7.67 -2.39 -0.02 0.97 16 30 H 0.02 1.21 7.43 -2.39 -0.02 1.19 16 31 H 0.07 1.85 7.59 -2.39 -0.02 1.83 16 32 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -67.91 258.71 0.25 -67.66 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.08 Total: 3.29 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.41 Total: -3.80 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -7.27 Total: -115.46 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.91 0.25 -67.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307440180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.749 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds