Wall clock time and date at job start Mon Mar 30 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.54204 * 2 1 4 4 C 1.54897 * 110.48817 * 122.61345 * 2 1 3 5 5 C 1.54889 * 102.74981 * 156.62193 * 4 2 1 6 6 C 1.54271 * 104.19622 * 322.05748 * 5 4 2 7 7 H 1.09001 * 110.02726 * 264.33033 * 6 5 4 8 8 N 1.46493 * 110.07630 * 142.91925 * 6 5 4 9 9 C 1.36943 * 119.99751 * 302.81270 * 8 6 5 10 10 H 1.07994 * 119.99952 * 16.85616 * 9 8 6 11 11 C 1.38820 * 119.99565 * 196.86028 * 9 8 6 12 12 N 1.31615 * 120.00019 * 22.29062 * 11 9 8 13 13 Si 1.86797 * 119.99508 * 202.29222 * 11 9 8 14 14 H 1.48502 * 109.47319 * 90.00061 * 13 11 9 15 15 H 1.48501 * 109.46667 * 209.99777 * 13 11 9 16 16 H 1.48499 * 109.47228 * 329.99689 * 13 11 9 17 17 C 1.46500 * 120.00246 * 122.80482 * 8 6 5 18 18 C 1.47199 * 109.46974 * 84.23889 * 17 8 6 19 19 N 5.80333 * 116.64266 * 242.95272 * 2 1 3 20 20 C 1.53872 * 106.59929 * 23.60785 * 6 5 4 21 21 H 1.08997 * 109.46905 * 182.61213 * 1 2 3 22 22 H 1.08995 * 109.47077 * 302.61538 * 1 2 3 23 23 H 1.08996 * 109.46998 * 62.61308 * 1 2 3 24 24 H 1.09001 * 110.75115 * 274.93661 * 4 2 1 25 25 H 1.09001 * 110.75368 * 38.30389 * 4 2 1 26 26 H 1.09003 * 110.48191 * 203.37819 * 5 4 2 27 27 H 1.09002 * 110.59880 * 80.79189 * 5 4 2 28 28 H 0.97000 * 119.99517 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.47400 * 204.24449 * 17 8 6 30 30 H 1.09003 * 109.47185 * 324.24338 * 17 8 6 31 31 H 1.08999 * 110.03938 * 240.72115 * 20 6 5 32 32 H 1.09001 * 110.06741 * 119.30736 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1980 0.7600 6 6 3.3166 -1.5405 -0.7341 7 1 3.1692 -2.6136 -0.8563 8 7 4.4940 -1.1067 -1.4900 9 6 4.8844 0.2055 -1.4557 10 1 4.5121 0.8596 -0.6813 11 6 5.7587 0.6948 -2.4167 12 7 5.8739 0.0808 -3.5751 13 14 6.7715 2.2245 -2.0653 14 1 8.0635 1.8317 -1.4474 15 1 7.0303 2.9492 -3.3354 16 1 6.0259 3.1087 -1.1340 17 6 5.2541 -2.0766 -2.2824 18 6 4.6209 -2.2359 -3.6017 19 7 4.1323 -2.3587 -4.6198 20 6 2.0699 -0.7789 -1.2173 21 1 -0.3633 -1.0266 0.0468 22 1 -0.3633 0.5539 0.8656 23 1 -0.3633 0.4727 -0.9125 24 1 2.1251 -0.1382 2.1001 25 1 1.4580 -1.6601 1.4223 26 1 3.8316 -2.0722 1.3147 27 1 4.1916 -0.3722 0.8829 28 1 6.4851 0.4226 -4.2464 29 1 6.2760 -1.7200 -2.4105 30 1 5.2663 -3.0370 -1.7670 31 1 1.3175 -1.4823 -1.5740 32 1 2.3405 -0.0859 -2.0139 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307581523.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:07 Heat of formation + Delta-G solvation = 18.067412 kcal Electronic energy + Delta-G solvation = -14027.082727 eV Core-core repulsion = 11794.176220 eV Total energy + Delta-G solvation = -2232.906507 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70848 -37.31456 -35.82774 -33.21826 -31.21670 -29.28425 -28.30821 -25.99774 -24.07623 -21.16799 -20.41419 -19.03012 -17.62363 -17.13485 -16.13437 -15.83578 -15.29293 -14.96183 -14.29293 -14.04769 -13.80850 -13.60158 -13.26247 -12.99705 -12.79985 -12.64560 -12.33167 -12.26454 -12.06505 -11.83017 -11.63240 -11.48806 -11.34244 -11.17926 -11.07158 -10.50265 -8.91572 -7.88322 -5.22947 1.51603 1.54925 1.61029 2.30457 2.52607 2.62937 3.29762 3.69679 3.88014 3.97613 4.05663 4.21166 4.60773 4.69638 4.78872 4.83643 4.89518 4.96046 5.00792 5.14216 5.17772 5.27448 5.33418 5.35929 5.45458 5.62579 5.65860 5.73159 5.81485 6.34342 7.12012 7.34268 7.86446 8.25767 9.18683 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.025677 B = 0.012907 C = 0.010208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.210537 B = 2168.890348 C = 2742.271068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.052 0.948 4 C -0.107 4.107 5 C -0.126 4.126 6 C 0.158 3.842 7 H 0.072 0.928 8 N -0.588 5.588 9 C -0.237 4.237 10 H 0.081 0.919 11 C -0.049 4.049 12 N -0.933 5.933 13 Si 0.958 3.042 14 H -0.281 1.281 15 H -0.311 1.311 16 H -0.273 1.273 17 C 0.255 3.745 18 C 0.261 3.739 19 N -0.553 5.553 20 C -0.128 4.128 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.246 0.754 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 -2.976 11.807 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.070 0.930 4 C -0.144 4.144 5 C -0.165 4.165 6 C 0.052 3.948 7 H 0.090 0.910 8 N -0.308 5.308 9 C -0.367 4.367 10 H 0.099 0.901 11 C -0.244 4.244 12 N -0.580 5.580 13 Si 0.788 3.212 14 H -0.208 1.208 15 H -0.239 1.239 16 H -0.198 1.198 17 C 0.124 3.876 18 C -0.057 4.057 19 N -0.235 5.235 20 C -0.167 4.167 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.649 -3.100 10.217 12.080 hybrid contribution 0.858 1.300 -0.471 1.627 sum -4.791 -1.800 9.746 11.008 Atomic orbital electron populations 1.21752 0.94179 1.02079 1.01328 1.21873 0.95831 0.98414 0.95130 0.92976 1.22474 0.95716 0.99763 0.96494 1.22688 0.97154 1.01503 0.95128 1.21401 0.84939 0.96757 0.91694 0.90958 1.44516 1.29070 1.05312 1.51868 1.19355 1.21953 0.87787 1.07595 0.90088 1.25424 1.03343 1.00945 0.94676 1.70074 1.39437 1.43885 1.04620 0.85393 0.79809 0.79995 0.75986 1.20792 1.23923 1.19837 1.18626 0.95362 0.93625 0.79943 1.31306 0.91031 0.87703 0.95636 1.80783 1.13417 1.14911 1.14416 1.22615 0.97710 0.98654 0.97724 0.91918 0.91526 0.94013 0.91038 0.90224 0.90634 0.92273 0.94413 0.88518 0.87671 0.93038 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.12 71.98 0.66 -2.64 16 2 C -0.09 -2.79 3.46 -9.71 -0.03 -2.82 16 3 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 4 C -0.11 -2.66 6.33 31.89 0.20 -2.46 16 5 C -0.13 -3.72 6.37 31.67 0.20 -3.51 16 6 C 0.16 5.60 3.41 45.72 0.16 5.76 16 7 H 0.07 2.32 7.90 -2.39 -0.02 2.30 16 8 N -0.59 -25.40 2.43 -684.48 -1.66 -27.06 16 9 C -0.24 -11.53 8.02 84.03 0.67 -10.85 16 10 H 0.08 3.90 6.96 -2.91 -0.02 3.88 16 11 C -0.05 -2.54 4.85 84.86 0.41 -2.13 16 12 N -0.93 -51.99 9.50 21.65 0.21 -51.78 16 13 Si 0.96 43.01 29.61 68.60 2.03 45.04 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.31 -14.79 7.11 99.48 0.71 -14.09 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 C 0.25 10.61 5.36 84.57 0.45 11.07 16 18 C 0.26 12.60 13.69 89.44 1.22 13.83 16 19 N -0.55 -29.10 18.54 20.00 0.37 -28.73 16 20 C -0.13 -4.66 5.85 31.32 0.18 -4.48 16 21 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 25 H 0.08 1.69 8.04 -2.39 -0.02 1.67 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 2.01 6.50 -2.39 -0.02 2.00 16 28 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.10 4.40 6.42 -2.39 -0.02 4.39 16 30 H 0.11 3.36 8.05 -2.39 -0.02 3.34 16 31 H 0.05 1.78 7.84 -2.39 -0.02 1.76 16 32 H 0.03 1.29 7.37 -2.39 -0.02 1.28 16 Total: -1.00 -61.08 264.07 6.16 -54.91 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.09 Total: 5.86 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.13 Total: 1.76 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -1.09 Total: -107.57 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.08 6.16 -54.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307581523.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.982 kcal (2) G-P(sol) polarization free energy of solvation -61.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds