Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.81935 * 2 1 4 4 C 1.54890 * 110.75797 * 123.33966 * 2 1 3 5 5 C 1.54263 * 104.19827 * 156.25979 * 4 2 1 6 6 C 1.53880 * 106.59658 * 336.38545 * 5 4 2 7 7 H 1.08998 * 110.02917 * 119.33451 * 6 5 4 8 8 N 1.46500 * 110.03291 * 240.71826 * 6 5 4 9 9 C 1.36938 * 119.99968 * 58.54824 * 8 6 5 10 10 H 1.07995 * 119.99953 * 16.26981 * 9 8 6 11 11 C 1.38814 * 119.99670 * 196.27018 * 9 8 6 12 12 N 1.31616 * 120.00030 * 22.61227 * 11 9 8 13 13 Si 1.86801 * 119.99658 * 202.61561 * 11 9 8 14 14 H 1.48498 * 109.47303 * 85.86535 * 13 11 9 15 15 H 1.48499 * 109.46899 * 205.86309 * 13 11 9 16 16 H 1.48505 * 109.47199 * 325.85790 * 13 11 9 17 17 C 1.46504 * 119.99668 * 238.54482 * 8 6 5 18 18 C 1.47201 * 109.46697 * 83.96135 * 17 8 6 19 19 N 6.39692 * 150.29192 * 192.55806 * 2 1 3 20 20 C 1.54264 * 106.59831 * 0.02562 * 6 5 4 21 21 H 1.09000 * 109.47016 * 298.11608 * 1 2 3 22 22 H 1.08999 * 109.47188 * 58.11603 * 1 2 3 23 23 H 1.09004 * 109.47147 * 178.11769 * 1 2 3 24 24 H 1.09005 * 110.48661 * 37.57595 * 4 2 1 25 25 H 1.08998 * 110.48379 * 274.93770 * 4 2 1 26 26 H 1.08995 * 110.03824 * 95.66870 * 5 4 2 27 27 H 1.09003 * 110.03027 * 217.05708 * 5 4 2 28 28 H 0.97004 * 119.99695 * 179.97438 * 12 11 9 29 29 H 1.09003 * 109.46669 * 203.95863 * 17 8 6 30 30 H 1.08997 * 109.47319 * 323.95959 * 17 8 6 31 31 H 1.08997 * 110.48859 * 142.28650 * 20 6 5 32 32 H 1.09000 * 110.48936 * 264.79938 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0789 -0.7960 1.2100 5 6 3.4931 -1.2268 0.7693 6 6 3.4931 -1.2268 -0.7695 7 1 4.2331 -0.5190 -1.1428 8 7 3.7872 -2.5714 -1.2713 9 6 2.9817 -3.6230 -0.9245 10 1 2.0011 -3.4388 -0.5113 11 6 3.4257 -4.9259 -1.1040 12 7 4.7157 -5.1782 -1.1717 13 14 2.1922 -6.3212 -1.2497 14 1 1.7517 -6.4472 -2.6622 15 1 2.8274 -7.5909 -0.8142 16 1 1.0169 -6.0348 -0.3882 17 6 4.9431 -2.7907 -2.1443 18 6 6.1526 -2.9621 -1.3230 19 7 7.0861 -3.0944 -0.6893 20 6 2.0791 -0.7954 -1.2101 21 1 -0.3633 0.4843 0.9064 22 1 -0.3633 0.5428 -0.8726 23 1 -0.3634 -1.0271 -0.0338 24 1 1.4574 -1.6699 1.4054 25 1 2.1319 -0.1593 2.0931 26 1 4.2326 -0.5184 1.1426 27 1 3.7123 -2.2269 1.1434 28 1 5.0259 -6.0887 -1.2968 29 1 4.7809 -3.6866 -2.7437 30 1 5.0697 -1.9312 -2.8025 31 1 2.1323 -0.1586 -2.0931 32 1 1.4579 -1.6690 -1.4078 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307581524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = 33.118201 kcal Electronic energy + Delta-G solvation = -14028.142898 eV Core-core repulsion = 11795.889043 eV Total energy + Delta-G solvation = -2232.253856 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.24165 -35.57527 -33.98357 -31.46074 -29.81175 -27.82140 -26.53615 -24.62182 -22.44262 -19.50025 -19.22351 -17.21300 -15.79360 -15.31732 -15.05762 -13.97717 -13.76573 -13.13844 -13.02692 -12.63540 -12.22623 -11.90768 -11.68033 -11.32568 -11.06481 -10.87342 -10.78882 -10.60213 -10.35125 -10.30930 -10.19732 -10.04540 -9.82639 -9.70812 -9.59348 -8.61357 -7.08710 -5.92094 -3.27467 3.35189 3.42797 3.44483 4.15694 4.41011 4.52590 5.10559 5.23335 5.25691 5.36208 5.56766 5.72981 5.83301 5.92772 5.99495 6.08315 6.20549 6.33036 6.35533 6.46802 6.51739 6.56010 6.67043 6.74407 6.94112 7.05159 7.11680 7.20195 7.74296 8.21881 9.03102 9.22995 9.70070 10.14510 11.16797 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.013548 C = 0.009917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.394670 B = 2066.206655 C = 2822.854942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.169 3.831 7 H 0.055 0.945 8 N -0.579 5.579 9 C -0.253 4.253 10 H 0.082 0.918 11 C 0.001 3.999 12 N -0.902 5.902 13 Si 0.903 3.097 14 H -0.286 1.286 15 H -0.294 1.294 16 H -0.280 1.280 17 C 0.255 3.745 18 C 0.249 3.751 19 N -0.512 5.512 20 C -0.127 4.127 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.258 0.742 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 8.502 -1.372 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.176 4.176 6 C 0.061 3.939 7 H 0.073 0.927 8 N -0.298 5.298 9 C -0.381 4.381 10 H 0.099 0.901 11 C -0.197 4.197 12 N -0.547 5.547 13 Si 0.733 3.267 14 H -0.213 1.213 15 H -0.220 1.220 16 H -0.206 1.206 17 C 0.125 3.875 18 C -0.069 4.069 19 N -0.193 5.193 20 C -0.166 4.166 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.383 8.128 -0.462 9.760 hybrid contribution -0.886 -0.959 -0.060 1.307 sum -6.268 7.169 -0.521 9.537 Atomic orbital electron populations 1.21739 0.95838 1.01657 1.00520 1.22057 0.94649 0.98575 0.96505 0.91672 1.22324 0.97331 0.98949 0.96441 1.22618 0.95168 1.01805 0.98018 1.21069 0.94425 0.86488 0.91881 0.92661 1.44283 1.27599 1.03597 1.54369 1.19147 0.96017 0.84190 1.38762 0.90067 1.24858 0.95596 0.97537 1.01734 1.69947 1.11724 1.19929 1.53065 0.86278 0.80675 0.81673 0.78048 1.21280 1.22031 1.20579 1.18376 0.78919 1.00900 0.89265 1.30656 0.93302 0.89356 0.93614 1.80799 1.14850 1.12937 1.10707 1.22859 0.98462 0.99445 0.95874 0.93526 0.93270 0.92586 0.91841 0.93284 0.93791 0.90324 0.93159 0.86887 0.92547 0.93027 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.27 37.16 0.34 -1.43 16 2 C -0.10 -1.42 3.49 -88.64 -0.31 -1.73 16 3 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.11 -1.80 6.28 -25.07 -0.16 -1.95 16 5 C -0.14 -2.57 6.27 -25.61 -0.16 -2.73 16 6 C 0.17 3.17 3.41 -66.81 -0.23 2.94 16 7 H 0.06 0.98 7.91 -51.93 -0.41 0.57 16 8 N -0.58 -12.79 2.44 -167.69 -0.41 -13.20 16 9 C -0.25 -6.16 7.94 -15.06 -0.12 -6.28 16 10 H 0.08 1.97 7.08 -52.49 -0.37 1.60 16 11 C 0.00 0.03 4.85 -17.43 -0.08 -0.06 16 12 N -0.90 -24.61 9.52 55.49 0.53 -24.09 16 13 Si 0.90 20.66 29.61 -169.99 -5.03 15.63 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.26 5.47 5.36 -6.83 -0.04 5.44 16 18 C 0.25 6.02 13.74 -20.76 -0.29 5.74 16 19 N -0.51 -13.31 18.54 42.15 0.78 -12.53 16 20 C -0.13 -2.08 5.82 -25.08 -0.15 -2.22 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 24 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.78 7.32 -51.93 -0.38 1.40 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.11 2.59 6.37 -51.93 -0.33 2.26 16 30 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.48 6.50 -51.93 -0.34 1.14 16 LS Contribution 264.42 15.07 3.98 3.98 Total: -1.00 -28.12 264.42 -6.09 -34.21 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.76 Total: -1.71 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.18 Total: -2.29 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.90 Total: -49.81 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.12 -6.09 -34.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307581524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.326 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds