Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.81935 * 2 1 4 4 C 1.54890 * 110.75797 * 123.33966 * 2 1 3 5 5 C 1.54263 * 104.19827 * 156.25979 * 4 2 1 6 6 C 1.53880 * 106.59658 * 336.38545 * 5 4 2 7 7 H 1.08998 * 110.02917 * 119.33451 * 6 5 4 8 8 N 1.46500 * 110.03291 * 240.71826 * 6 5 4 9 9 C 1.36938 * 119.99968 * 58.54824 * 8 6 5 10 10 H 1.07995 * 119.99953 * 16.26981 * 9 8 6 11 11 C 1.38814 * 119.99670 * 196.27018 * 9 8 6 12 12 N 1.31616 * 120.00030 * 22.61227 * 11 9 8 13 13 Si 1.86801 * 119.99658 * 202.61561 * 11 9 8 14 14 H 1.48498 * 109.47303 * 85.86535 * 13 11 9 15 15 H 1.48499 * 109.46899 * 205.86309 * 13 11 9 16 16 H 1.48505 * 109.47199 * 325.85790 * 13 11 9 17 17 C 1.46504 * 119.99668 * 238.54482 * 8 6 5 18 18 C 1.47201 * 109.46697 * 83.96135 * 17 8 6 19 19 N 6.39692 * 150.29192 * 192.55806 * 2 1 3 20 20 C 1.54264 * 106.59831 * 0.02562 * 6 5 4 21 21 H 1.09000 * 109.47016 * 298.11608 * 1 2 3 22 22 H 1.08999 * 109.47188 * 58.11603 * 1 2 3 23 23 H 1.09004 * 109.47147 * 178.11769 * 1 2 3 24 24 H 1.09005 * 110.48661 * 37.57595 * 4 2 1 25 25 H 1.08998 * 110.48379 * 274.93770 * 4 2 1 26 26 H 1.08995 * 110.03824 * 95.66870 * 5 4 2 27 27 H 1.09003 * 110.03027 * 217.05708 * 5 4 2 28 28 H 0.97004 * 119.99695 * 179.97438 * 12 11 9 29 29 H 1.09003 * 109.46669 * 203.95863 * 17 8 6 30 30 H 1.08997 * 109.47319 * 323.95959 * 17 8 6 31 31 H 1.08997 * 110.48859 * 142.28650 * 20 6 5 32 32 H 1.09000 * 110.48936 * 264.79938 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0789 -0.7960 1.2100 5 6 3.4931 -1.2268 0.7693 6 6 3.4931 -1.2268 -0.7695 7 1 4.2331 -0.5190 -1.1428 8 7 3.7872 -2.5714 -1.2713 9 6 2.9817 -3.6230 -0.9245 10 1 2.0011 -3.4388 -0.5113 11 6 3.4257 -4.9259 -1.1040 12 7 4.7157 -5.1782 -1.1717 13 14 2.1922 -6.3212 -1.2497 14 1 1.7517 -6.4472 -2.6622 15 1 2.8274 -7.5909 -0.8142 16 1 1.0169 -6.0348 -0.3882 17 6 4.9431 -2.7907 -2.1443 18 6 6.1526 -2.9621 -1.3230 19 7 7.0861 -3.0944 -0.6893 20 6 2.0791 -0.7954 -1.2101 21 1 -0.3633 0.4843 0.9064 22 1 -0.3633 0.5428 -0.8726 23 1 -0.3634 -1.0271 -0.0338 24 1 1.4574 -1.6699 1.4054 25 1 2.1319 -0.1593 2.0931 26 1 4.2326 -0.5184 1.1426 27 1 3.7123 -2.2269 1.1434 28 1 5.0259 -6.0887 -1.2968 29 1 4.7809 -3.6866 -2.7437 30 1 5.0697 -1.9312 -2.8025 31 1 2.1323 -0.1586 -2.0931 32 1 1.4579 -1.6690 -1.4078 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307581524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = 18.136539 kcal Electronic energy + Delta-G solvation = -14028.792552 eV Core-core repulsion = 11795.889043 eV Total energy + Delta-G solvation = -2232.903509 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.70245 -37.31043 -35.82111 -33.20084 -31.22228 -29.29812 -28.30233 -26.00158 -24.10795 -20.87813 -20.65299 -19.02476 -17.56905 -16.99964 -16.47889 -15.71619 -15.42868 -14.65316 -14.33403 -14.04597 -13.80997 -13.63108 -13.24549 -13.00407 -12.78794 -12.68964 -12.36720 -12.20918 -12.06722 -11.81547 -11.64856 -11.45915 -11.30540 -11.19282 -11.08305 -10.49656 -8.91805 -7.88024 -5.22046 1.52034 1.55255 1.60953 2.29799 2.52134 2.62755 3.29760 3.68569 3.87420 3.96249 4.07829 4.25359 4.55590 4.72485 4.81092 4.85864 4.88486 4.94874 5.03789 5.11748 5.24358 5.30957 5.33442 5.34989 5.49896 5.57060 5.65285 5.75948 5.83092 6.34448 7.12195 7.33400 7.86672 8.25922 9.18987 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.013548 C = 0.009917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.394670 B = 2066.206655 C = 2822.854942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.086 0.914 4 C -0.109 4.109 5 C -0.135 4.135 6 C 0.159 3.841 7 H 0.072 0.928 8 N -0.588 5.588 9 C -0.236 4.236 10 H 0.081 0.919 11 C -0.049 4.049 12 N -0.933 5.933 13 Si 0.957 3.043 14 H -0.280 1.280 15 H -0.311 1.311 16 H -0.275 1.275 17 C 0.254 3.746 18 C 0.261 3.739 19 N -0.553 5.553 20 C -0.119 4.119 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.246 0.754 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 10.523 -1.865 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.104 0.896 4 C -0.147 4.147 5 C -0.175 4.175 6 C 0.053 3.947 7 H 0.090 0.910 8 N -0.308 5.308 9 C -0.365 4.365 10 H 0.099 0.901 11 C -0.244 4.244 12 N -0.580 5.580 13 Si 0.787 3.213 14 H -0.207 1.207 15 H -0.239 1.239 16 H -0.200 1.200 17 C 0.124 3.876 18 C -0.057 4.057 19 N -0.235 5.235 20 C -0.158 4.158 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.981 10.184 -0.956 12.384 hybrid contribution -0.412 -1.514 0.134 1.575 sum -7.393 8.670 -0.822 11.424 Atomic orbital electron populations 1.21705 0.94343 1.01344 1.02061 1.22044 0.95850 0.98831 0.94137 0.89600 1.22295 0.95135 0.99037 0.98195 1.22550 0.97378 0.99328 0.98228 1.21387 0.96544 0.85092 0.91720 0.91010 1.44522 1.27220 1.04388 1.54626 1.19327 0.96038 0.84777 1.36404 0.90139 1.25407 0.96597 0.99401 1.02994 1.70088 1.13047 1.19251 1.55622 0.85419 0.78953 0.78796 0.78091 1.20669 1.23858 1.20046 1.18651 0.77604 1.02271 0.89098 1.31327 0.93247 0.88120 0.93001 1.80788 1.16266 1.14382 1.12070 1.22755 0.96138 0.99292 0.97653 0.92060 0.91711 0.93863 0.93368 0.91343 0.93007 0.95000 0.94403 0.88387 0.87705 0.90835 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.27 71.98 0.67 -2.32 16 2 C -0.09 -2.26 3.49 -9.51 -0.03 -2.29 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.11 -3.24 6.28 31.67 0.20 -3.04 16 5 C -0.14 -4.94 6.27 31.32 0.20 -4.75 16 6 C 0.16 5.62 3.41 45.72 0.16 5.77 16 7 H 0.07 2.31 7.91 -2.39 -0.02 2.29 16 8 N -0.59 -25.35 2.44 -684.46 -1.67 -27.02 16 9 C -0.24 -11.43 7.94 84.03 0.67 -10.76 16 10 H 0.08 3.88 7.08 -2.91 -0.02 3.85 16 11 C -0.05 -2.54 4.85 84.86 0.41 -2.13 16 12 N -0.93 -51.83 9.52 21.65 0.21 -51.62 16 13 Si 0.96 42.93 29.61 68.60 2.03 44.96 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 15 H -0.31 -14.73 7.11 99.48 0.71 -14.03 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 17 C 0.25 10.57 5.36 84.57 0.45 11.02 16 18 C 0.26 12.56 13.74 89.44 1.23 13.79 16 19 N -0.55 -29.00 18.54 20.01 0.37 -28.63 16 20 C -0.12 -3.54 5.82 31.66 0.18 -3.35 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 24 H 0.05 1.57 8.05 -2.38 -0.02 1.55 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.44 7.32 -2.39 -0.02 1.43 16 28 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.10 4.46 6.37 -2.39 -0.02 4.45 16 30 H 0.11 3.35 8.06 -2.39 -0.02 3.33 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 2.06 6.50 -2.39 -0.02 2.04 16 Total: -1.00 -60.66 264.42 6.16 -54.50 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.09 Total: 5.87 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 4.13 Total: 1.94 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -1.09 Total: -107.28 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -60.66 6.16 -54.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307581524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.637 kcal (2) G-P(sol) polarization free energy of solvation -60.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds