Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46929 * 2 1 4 4 C 1.50690 * 109.47490 * 120.00288 * 2 1 3 5 5 H 1.08006 * 119.99740 * 119.99887 * 4 2 1 6 6 C 1.37881 * 120.00400 * 300.00286 * 4 2 1 7 7 N 1.31513 * 119.99770 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99985 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47012 * 60.00284 * 8 6 4 10 10 H 1.48498 * 109.46718 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47172 * 299.99779 * 8 6 4 12 12 N 1.46897 * 109.46870 * 240.00986 * 2 1 3 13 13 C 1.46899 * 111.00355 * 84.99686 * 12 2 1 14 14 H 1.09002 * 109.47043 * 324.99919 * 13 12 2 15 15 C 1.53002 * 109.47394 * 84.99974 * 13 12 2 16 16 C 1.50703 * 109.47107 * 204.99940 * 13 12 2 17 17 C 1.34854 * 125.88950 * 155.00216 * 16 13 12 18 18 C 1.40890 * 107.41250 * 179.97438 * 17 16 13 19 19 C 1.34844 * 107.42271 * 359.97438 * 18 17 16 20 20 N 1.36341 * 125.89109 * 334.68631 * 16 13 12 21 21 H 0.97006 * 125.63315 * 0.02562 * 20 16 13 22 22 H 1.09004 * 109.46437 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46575 * 299.99300 * 1 2 3 24 24 H 1.08988 * 109.47163 * 59.99402 * 1 2 3 25 25 H 0.96998 * 119.99795 * 179.97438 * 7 6 4 26 26 H 1.00898 * 111.00020 * 321.03518 * 12 2 1 27 27 H 1.09002 * 109.47075 * 59.99404 * 15 13 12 28 28 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 29 29 H 1.09000 * 109.46986 * 300.00133 * 15 13 12 30 30 H 1.07992 * 126.28956 * 0.02562 * 17 16 13 31 31 H 1.08001 * 126.28805 * 180.02562 * 18 17 16 32 32 H 1.08002 * 125.89472 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8300 2.6035 8 14 2.3217 -1.1207 4.0078 9 1 3.8066 -1.1211 4.0079 10 1 1.8273 -0.4203 5.2203 11 1 1.8262 -2.5206 4.0075 12 7 2.0196 -0.6923 -1.1996 13 6 2.0824 0.2229 -2.3469 14 1 1.2575 0.9332 -2.2906 15 6 3.4110 0.9813 -2.3224 16 6 1.9785 -0.5672 -3.6260 17 6 1.5335 -0.0997 -4.8101 18 6 1.6015 -1.1606 -5.7346 19 6 2.0859 -2.2357 -5.0806 20 7 2.3238 -1.8763 -3.7871 21 1 2.6782 -2.4566 -3.0953 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 0.7091 1.1610 3.4845 26 1 1.4496 -1.4977 -1.4102 27 1 4.2359 0.2709 -2.3787 28 1 3.4574 1.6606 -3.1735 29 1 3.4862 1.5527 -1.3973 30 1 1.1892 0.9036 -5.0125 31 1 1.3185 -1.1200 -6.7761 32 1 2.2594 -3.2121 -5.5086 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308132795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = 38.077150 kcal Electronic energy + Delta-G solvation = -13600.170299 eV Core-core repulsion = 11368.131479 eV Total energy + Delta-G solvation = -2232.038819 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.82418 -36.43554 -33.13551 -30.80990 -30.50395 -27.61756 -26.99755 -25.15768 -22.25128 -20.49282 -19.73489 -19.51471 -17.53345 -15.99965 -14.88232 -14.59838 -14.13107 -13.63179 -13.25873 -12.80395 -12.65511 -12.34362 -11.96587 -11.82033 -11.51171 -11.32462 -11.05383 -10.88866 -10.63277 -10.45936 -10.12469 -9.83868 -9.03895 -8.56697 -8.37881 -7.72155 -7.35985 -6.00594 -4.04251 2.59688 3.28953 3.32427 3.36763 3.39588 3.67308 4.41508 5.10881 5.30748 5.31469 5.40398 5.71868 5.88545 5.96371 5.98318 6.28917 6.41606 6.54619 6.59333 6.68582 6.77568 6.82536 7.08325 7.19445 7.36217 7.48535 7.71393 7.84810 7.92627 8.24049 8.44766 8.56227 9.01753 9.60949 11.06448 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.054901 B = 0.007270 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.886305 B = 3850.370390 C = 3960.081456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.279 1.279 12 N -0.683 5.683 13 C 0.146 3.854 14 H 0.056 0.944 15 C -0.129 4.129 16 C 0.038 3.962 17 C -0.211 4.211 18 C -0.204 4.204 19 C -0.028 4.028 20 N -0.546 5.546 21 H 0.418 0.582 22 H 0.026 0.974 23 H 0.090 0.910 24 H 0.006 0.994 25 H 0.261 0.739 26 H 0.322 0.678 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -3.007 -11.274 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.313 5.313 13 C 0.035 3.965 14 H 0.074 0.926 15 C -0.187 4.187 16 C -0.077 4.077 17 C -0.235 4.235 18 C -0.229 4.229 19 C -0.159 4.159 20 N -0.141 5.141 21 H 0.255 0.745 22 H 0.045 0.955 23 H 0.108 0.892 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.139 0.861 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.214 -2.894 -10.845 11.440 hybrid contribution -0.604 -0.622 0.879 1.235 sum 1.610 -3.516 -9.965 10.690 Atomic orbital electron populations 1.22437 1.00649 0.99192 1.00609 1.19205 0.89594 0.94565 0.86138 0.94462 1.21086 1.30402 1.12489 0.89615 0.92105 1.24946 0.95304 0.95193 0.99022 1.69870 1.37139 1.23104 1.23498 0.86565 0.79153 0.79574 0.82092 1.20312 1.21419 1.20429 1.60985 1.57929 1.09018 1.03410 1.20103 0.97891 0.93181 0.85363 0.92608 1.21732 0.96483 0.99308 1.01167 1.20701 1.04751 0.84882 0.97346 1.20619 1.10467 0.99728 0.92726 1.20791 1.09140 0.93573 0.99386 1.21735 1.09311 1.00207 0.84645 1.41980 1.50845 1.10750 1.10476 0.74492 0.95464 0.89171 0.97484 0.92961 0.86122 0.92737 0.93293 0.91811 0.85268 0.85330 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.25 2.38 -68.87 -0.16 5.08 16 3 H 0.04 1.01 7.11 -51.93 -0.37 0.64 16 4 C -0.50 -13.57 8.84 -34.44 -0.30 -13.87 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.68 -14.09 5.84 -102.17 -0.60 -14.69 16 13 C 0.15 2.65 2.88 -68.86 -0.20 2.46 16 14 H 0.06 1.08 7.11 -51.93 -0.37 0.71 16 15 C -0.13 -2.22 9.38 37.16 0.35 -1.87 16 16 C 0.04 0.62 5.86 -81.79 -0.48 0.14 16 17 C -0.21 -3.30 10.77 -39.78 -0.43 -3.73 16 18 C -0.20 -2.86 10.86 -39.78 -0.43 -3.29 16 19 C -0.03 -0.36 11.94 -16.75 -0.20 -0.56 16 20 N -0.55 -7.93 5.71 -9.12 -0.05 -7.98 16 21 H 0.42 5.59 8.58 -40.82 -0.35 5.24 16 22 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 24 H 0.01 0.14 7.42 -51.94 -0.39 -0.25 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.32 6.43 7.64 -39.29 -0.30 6.12 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.19 7.43 -51.93 -0.39 0.80 16 30 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 266.95 15.07 4.02 4.02 Total: -1.00 -28.60 266.95 -7.20 -35.80 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.56 Total: 9.34 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.62 Total: -17.96 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.02 Total: -47.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.60 -7.20 -35.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.874 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds