Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46929 * 2 1 4 4 C 1.50690 * 109.47490 * 120.00288 * 2 1 3 5 5 H 1.08006 * 119.99740 * 119.99887 * 4 2 1 6 6 C 1.37881 * 120.00400 * 300.00286 * 4 2 1 7 7 N 1.31513 * 119.99770 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99985 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47012 * 60.00284 * 8 6 4 10 10 H 1.48498 * 109.46718 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47172 * 299.99779 * 8 6 4 12 12 N 1.46897 * 109.46870 * 240.00986 * 2 1 3 13 13 C 1.46899 * 111.00355 * 84.99686 * 12 2 1 14 14 H 1.09002 * 109.47043 * 324.99919 * 13 12 2 15 15 C 1.53002 * 109.47394 * 84.99974 * 13 12 2 16 16 C 1.50703 * 109.47107 * 204.99940 * 13 12 2 17 17 C 1.34854 * 125.88950 * 155.00216 * 16 13 12 18 18 C 1.40890 * 107.41250 * 179.97438 * 17 16 13 19 19 C 1.34844 * 107.42271 * 359.97438 * 18 17 16 20 20 N 1.36341 * 125.89109 * 334.68631 * 16 13 12 21 21 H 0.97006 * 125.63315 * 0.02562 * 20 16 13 22 22 H 1.09004 * 109.46437 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46575 * 299.99300 * 1 2 3 24 24 H 1.08988 * 109.47163 * 59.99402 * 1 2 3 25 25 H 0.96998 * 119.99795 * 179.97438 * 7 6 4 26 26 H 1.00898 * 111.00020 * 321.03518 * 12 2 1 27 27 H 1.09002 * 109.47075 * 59.99404 * 15 13 12 28 28 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 29 29 H 1.09000 * 109.46986 * 300.00133 * 15 13 12 30 30 H 1.07992 * 126.28956 * 0.02562 * 17 16 13 31 31 H 1.08001 * 126.28805 * 180.02562 * 18 17 16 32 32 H 1.08002 * 125.89472 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8300 2.6035 8 14 2.3217 -1.1207 4.0078 9 1 3.8066 -1.1211 4.0079 10 1 1.8273 -0.4203 5.2203 11 1 1.8262 -2.5206 4.0075 12 7 2.0196 -0.6923 -1.1996 13 6 2.0824 0.2229 -2.3469 14 1 1.2575 0.9332 -2.2906 15 6 3.4110 0.9813 -2.3224 16 6 1.9785 -0.5672 -3.6260 17 6 1.5335 -0.0997 -4.8101 18 6 1.6015 -1.1606 -5.7346 19 6 2.0859 -2.2357 -5.0806 20 7 2.3238 -1.8763 -3.7871 21 1 2.6782 -2.4566 -3.0953 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 0.7091 1.1610 3.4845 26 1 1.4496 -1.4977 -1.4102 27 1 4.2359 0.2709 -2.3787 28 1 3.4574 1.6606 -3.1735 29 1 3.4862 1.5527 -1.3973 30 1 1.1892 0.9036 -5.0125 31 1 1.3185 -1.1200 -6.7761 32 1 2.2594 -3.2121 -5.5086 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308132795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = 19.838753 kcal Electronic energy + Delta-G solvation = -13600.961175 eV Core-core repulsion = 11368.131479 eV Total energy + Delta-G solvation = -2232.829696 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.97029 -38.14020 -35.02226 -32.52408 -31.70846 -28.91902 -28.65540 -27.24698 -23.75969 -22.01960 -20.95703 -20.90278 -19.04313 -17.82619 -16.76842 -16.18325 -15.47380 -15.23788 -14.47839 -14.40557 -14.21726 -13.81160 -13.43467 -13.23658 -13.02322 -13.00089 -12.79066 -12.73190 -12.30903 -12.26537 -12.06236 -11.66371 -11.06076 -10.48430 -9.68691 -9.11074 -8.84958 -8.10068 -6.21316 1.43435 1.44934 1.45563 1.52691 2.17002 2.43313 2.56327 3.18646 3.54141 3.94648 4.38714 4.50024 4.52906 4.67751 4.71635 4.83197 4.84478 4.91997 4.95518 5.13620 5.32469 5.34808 5.42315 5.50275 5.67369 5.79489 6.13048 6.25545 6.31670 6.58881 6.75780 6.85027 6.91712 7.48337 8.95594 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.054901 B = 0.007270 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.886305 B = 3850.370390 C = 3960.081456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.219 3.781 3 H 0.008 0.992 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.678 5.678 13 C 0.150 3.850 14 H 0.041 0.959 15 C -0.122 4.122 16 C 0.011 3.989 17 C -0.217 4.217 18 C -0.219 4.219 19 C -0.013 4.013 20 N -0.547 5.547 21 H 0.422 0.578 22 H 0.029 0.971 23 H 0.063 0.937 24 H 0.022 0.978 25 H 0.261 0.739 26 H 0.327 0.673 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -4.378 -12.320 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.110 3.890 3 H 0.026 0.974 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.308 5.308 13 C 0.039 3.961 14 H 0.059 0.941 15 C -0.180 4.180 16 C -0.103 4.103 17 C -0.243 4.243 18 C -0.244 4.244 19 C -0.145 4.145 20 N -0.142 5.142 21 H 0.260 0.740 22 H 0.048 0.952 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.600 -4.271 -11.904 12.912 hybrid contribution -0.724 -0.195 1.110 1.339 sum 1.876 -4.467 -10.795 11.832 Atomic orbital electron populations 1.22258 1.00290 0.99096 1.00021 1.18941 0.89722 0.93051 0.87273 0.97414 1.21400 1.30536 1.12559 0.90930 0.92531 1.25719 0.95447 0.95860 1.01907 1.70002 1.37959 1.24241 1.24073 0.85568 0.78622 0.78635 0.78491 1.19902 1.21103 1.19672 1.60842 1.57475 1.09297 1.03227 1.20002 0.97700 0.92857 0.85535 0.94096 1.21671 0.96076 0.99338 1.00930 1.20382 1.07363 0.85960 0.96627 1.20879 1.09865 1.00585 0.92938 1.21123 1.09634 0.93219 1.00393 1.22385 1.06969 1.01469 0.83635 1.42042 1.50725 1.10093 1.11320 0.74048 0.95156 0.91777 0.95951 0.92985 0.85571 0.92709 0.91125 0.94021 0.84851 0.83152 0.78784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.67 8.92 71.98 0.64 -7.02 16 2 C 0.22 10.98 2.38 44.17 0.11 11.09 16 3 H 0.01 0.44 7.11 -2.39 -0.02 0.43 16 4 C -0.52 -28.34 8.84 25.60 0.23 -28.12 16 5 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 8 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.68 -28.01 5.84 -477.16 -2.78 -30.79 16 13 C 0.15 5.44 2.88 44.17 0.13 5.57 16 14 H 0.04 1.61 7.11 -2.39 -0.02 1.59 16 15 C -0.12 -4.20 9.38 71.98 0.68 -3.53 16 16 C 0.01 0.34 5.86 41.08 0.24 0.58 16 17 C -0.22 -6.45 10.77 22.14 0.24 -6.21 16 18 C -0.22 -5.51 10.86 22.14 0.24 -5.27 16 19 C -0.01 -0.30 11.94 83.21 0.99 0.69 16 20 N -0.55 -14.72 5.71 -182.76 -1.04 -15.77 16 21 H 0.42 10.50 8.58 -92.70 -0.80 9.70 16 22 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 23 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 24 H 0.02 0.97 7.42 -2.39 -0.02 0.95 16 25 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.33 12.88 7.64 -89.70 -0.69 12.20 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.59 7.43 -2.39 -0.02 1.57 16 30 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -60.44 266.95 2.01 -58.43 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.37 Total: 26.60 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.94 Total: -31.28 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -3.59 Total: -99.47 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -60.44 2.01 -58.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.266 kcal (2) G-P(sol) polarization free energy of solvation -60.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds