Wall clock time and date at job start Mon Mar 30 2020 02:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46894 * 111.00006 * 274.99752 * 12 2 1 14 14 H 1.09007 * 109.47416 * 35.00536 * 13 12 2 15 15 C 1.53002 * 109.47468 * 275.00094 * 13 12 2 16 16 C 1.50699 * 109.47164 * 154.99999 * 13 12 2 17 17 C 1.34857 * 125.89110 * 34.69131 * 16 13 12 18 18 C 1.40888 * 107.41890 * 179.88279 * 17 16 13 19 19 C 1.34849 * 107.41774 * 0.38231 * 18 17 16 20 20 N 1.36341 * 125.89589 * 214.99914 * 16 13 12 21 21 H 0.97006 * 125.63395 * 0.02562 * 20 16 13 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.00902 * 110.99844 * 151.04691 * 12 2 1 27 27 H 1.08994 * 109.46770 * 300.00068 * 15 13 12 28 28 H 1.08999 * 109.46602 * 60.00364 * 15 13 12 29 29 H 1.08995 * 109.47068 * 180.02562 * 15 13 12 30 30 H 1.08002 * 126.28870 * 0.02562 * 17 16 13 31 31 H 1.08003 * 126.28741 * 180.12327 * 18 17 16 32 32 H 1.07994 * 125.89336 * 179.80202 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2227 2.3469 14 1 1.2575 0.9331 2.2907 15 6 3.4111 0.9810 2.3224 16 6 1.9784 -0.5674 3.6259 17 6 2.4801 -1.8014 3.8359 18 6 2.1630 -2.1661 5.1593 19 6 1.4723 -1.1445 5.7050 20 7 1.3559 -0.1603 4.7686 21 1 0.9042 0.6889 4.8944 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 2.9173 -1.1205 1.0289 27 1 4.2358 0.2706 2.3787 28 1 3.4862 1.5525 1.3973 29 1 3.4578 1.6597 3.1740 30 1 3.0266 -2.3993 3.1216 31 1 2.4216 -3.0950 5.6458 32 1 1.0797 -1.1113 6.7105 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308132796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:45 Heat of formation + Delta-G solvation = 39.100222 kcal Electronic energy + Delta-G solvation = -13579.615952 eV Core-core repulsion = 11347.621497 eV Total energy + Delta-G solvation = -2231.994456 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.69458 -36.45511 -33.17253 -30.61605 -30.45314 -27.58024 -26.89219 -25.16674 -22.42094 -20.30635 -20.04110 -19.02436 -17.48114 -16.07210 -14.94633 -14.20945 -13.99351 -13.57078 -13.45740 -13.11065 -12.36959 -12.29209 -12.18454 -11.78754 -11.48633 -11.34726 -10.94543 -10.69059 -10.44752 -10.37770 -10.12572 -9.92478 -8.84918 -8.47821 -8.45146 -7.59025 -7.24114 -6.02718 -4.08754 2.66946 3.30832 3.37147 3.40227 3.46877 3.65454 4.41265 5.23714 5.29510 5.41817 5.47345 5.66483 5.75770 5.91435 6.03762 6.16891 6.32248 6.51126 6.67080 6.80096 6.87926 7.14879 7.22599 7.42170 7.49790 7.59863 7.79325 7.89743 7.95590 8.27109 8.41055 8.67842 9.02183 9.57300 11.03789 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.055194 B = 0.007221 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.179128 B = 3876.456389 C = 3981.051143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.150 3.850 14 H 0.073 0.927 15 C -0.171 4.171 16 C 0.046 3.954 17 C -0.185 4.185 18 C -0.204 4.204 19 C -0.034 4.034 20 N -0.561 5.561 21 H 0.408 0.592 22 H 0.032 0.968 23 H 0.001 0.999 24 H 0.080 0.920 25 H 0.261 0.739 26 H 0.335 0.665 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 -0.251 11.926 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.305 5.305 13 C 0.038 3.962 14 H 0.091 0.909 15 C -0.230 4.230 16 C -0.067 4.067 17 C -0.209 4.209 18 C -0.229 4.229 19 C -0.164 4.164 20 N -0.157 5.157 21 H 0.243 0.757 22 H 0.051 0.949 23 H 0.020 0.980 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.153 0.847 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.094 -0.259 11.952 12.005 hybrid contribution 0.749 0.437 -0.938 1.277 sum 1.843 0.177 11.014 11.169 Atomic orbital electron populations 1.21735 0.98010 0.99428 0.99109 1.19119 0.92448 0.92441 0.85410 0.97954 1.21254 1.31465 1.12425 0.90379 0.92120 1.24911 0.95072 0.94969 0.99044 1.69895 1.36800 1.22870 1.23449 0.86518 0.79268 0.79296 0.82431 1.20621 1.21327 1.19899 1.60626 1.32529 1.32223 1.05148 1.19818 0.96454 0.92133 0.87834 0.90891 1.22458 0.98370 1.00599 1.01616 1.20536 1.00909 0.96978 0.88264 1.20567 1.07762 0.95978 0.96574 1.20864 1.06324 0.99573 0.96161 1.21621 1.08541 0.90880 0.95342 1.41927 1.45499 1.16766 1.11470 0.75714 0.94887 0.98000 0.90112 0.92951 0.84682 0.92372 0.91725 0.93489 0.84998 0.85451 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.18 37.16 0.34 -2.79 16 2 C 0.21 5.35 2.41 -68.86 -0.17 5.18 16 3 H 0.00 0.08 7.11 -51.93 -0.37 -0.29 16 4 C -0.52 -14.11 8.59 -34.44 -0.30 -14.40 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 7 N -0.89 -25.37 11.33 55.43 0.63 -24.74 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.67 -14.44 5.68 -102.17 -0.58 -15.02 16 13 C 0.15 2.72 2.91 -68.87 -0.20 2.52 16 14 H 0.07 1.38 7.11 -51.93 -0.37 1.01 16 15 C -0.17 -2.80 9.13 37.16 0.34 -2.46 16 16 C 0.05 0.78 6.22 -81.79 -0.51 0.27 16 17 C -0.18 -3.15 10.34 -39.78 -0.41 -3.57 16 18 C -0.20 -3.05 10.86 -39.78 -0.43 -3.48 16 19 C -0.03 -0.45 11.94 -16.75 -0.20 -0.65 16 20 N -0.56 -7.87 6.07 -9.12 -0.06 -7.92 16 21 H 0.41 4.56 8.96 -40.82 -0.37 4.19 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.00 0.02 7.43 -51.93 -0.39 -0.36 16 24 H 0.08 2.19 6.08 -51.93 -0.32 1.88 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.33 7.04 7.96 -39.29 -0.31 6.73 16 27 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 28 H 0.06 1.14 7.43 -51.93 -0.39 0.76 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -29.39 267.42 -7.20 -36.59 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.58 Total: 8.59 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.63 Total: -17.77 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.01 Total: -47.68 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.39 -7.20 -36.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.695 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds