Wall clock time and date at job start Mon Mar 30 2020 02:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 5 5 H 1.07996 * 120.00253 * 119.99870 * 4 2 1 6 6 C 1.37878 * 119.99674 * 300.00113 * 4 2 1 7 7 N 1.31516 * 120.00218 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00079 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47364 * 90.00283 * 8 6 4 10 10 H 1.48500 * 109.47132 * 210.00144 * 8 6 4 11 11 H 1.48506 * 109.47173 * 329.99888 * 8 6 4 12 12 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 13 13 C 1.46901 * 110.99793 * 85.00144 * 12 2 1 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 2 15 15 C 1.40894 * 126.28912 * 90.02402 * 14 13 12 16 16 C 1.34850 * 107.41521 * 179.97438 * 15 14 13 17 17 N 1.36334 * 108.22083 * 0.02562 * 16 15 14 18 18 C 1.46501 * 125.63958 * 179.97438 * 17 16 15 19 19 C 1.34847 * 126.29067 * 269.71316 * 14 13 12 20 20 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 21 21 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 23 23 H 0.96999 * 120.00520 * 179.97438 * 7 6 4 24 24 H 1.00898 * 110.99995 * 208.95221 * 12 2 1 25 25 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 26 26 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 27 27 H 1.08000 * 126.29039 * 359.93865 * 15 14 13 28 28 H 1.08001 * 125.88852 * 179.97438 * 16 15 14 29 29 H 1.08996 * 109.47413 * 90.02426 * 18 17 16 30 30 H 1.09001 * 109.47091 * 210.02729 * 18 17 16 31 31 H 1.08997 * 109.46544 * 330.01991 * 18 17 16 32 32 H 1.07994 * 125.89368 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6259 1.2798 2.6541 9 1 -0.8021 0.8745 2.6994 10 1 0.9772 1.9954 3.9070 11 1 0.8491 2.1773 1.4922 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5884 -0.5216 -3.5558 15 6 1.8019 -1.2075 -4.5023 16 6 2.6399 -1.7318 -5.4195 17 7 3.9150 -1.3951 -5.0736 18 6 5.1258 -1.7689 -5.8088 19 6 3.8767 -0.6483 -3.9335 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9032 -0.5280 4.4376 24 1 2.9172 -1.1205 -1.0288 25 1 2.7588 1.0462 -2.1183 26 1 1.0870 0.6163 -2.5525 27 1 0.7257 -1.2975 -4.4944 28 1 2.3510 -2.3180 -6.2793 29 1 5.3516 -1.0028 -6.5506 30 1 5.9602 -1.8581 -5.1131 31 1 4.9666 -2.7238 -6.3095 32 1 4.7309 -0.2325 -3.4199 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308255020.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:29 Heat of formation + Delta-G solvation = 34.641263 kcal Electronic energy + Delta-G solvation = -13257.559863 eV Core-core repulsion = 11025.372053 eV Total energy + Delta-G solvation = -2232.187811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.92902 -37.88066 -34.87880 -33.63997 -31.59437 -29.44716 -27.72936 -27.02901 -24.84552 -21.71398 -21.12071 -20.39432 -18.88165 -17.79444 -17.05952 -16.05935 -15.67743 -15.37893 -15.04225 -14.76222 -14.37374 -14.03261 -13.67634 -13.56046 -13.14520 -13.04224 -12.86549 -12.61760 -12.38387 -12.16362 -11.98665 -11.42170 -11.04979 -10.76434 -9.32192 -9.10659 -8.87950 -8.30767 -6.35335 1.32073 1.36144 1.42405 1.47438 2.10221 2.23754 2.32099 3.04367 3.77089 4.08531 4.26070 4.27603 4.49338 4.51302 4.56285 4.62083 4.74495 4.75000 4.81489 4.91729 4.98306 5.05550 5.32969 5.52762 5.60631 5.67999 6.01693 6.14089 6.36692 6.55282 6.63855 6.69196 6.86806 7.31580 8.85833 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.060246 B = 0.006549 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.650695 B = 4274.450349 C = 4499.354769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.184 3.816 3 H -0.004 1.004 4 C -0.524 4.524 5 H 0.038 0.962 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.295 1.295 11 H -0.251 1.251 12 N -0.676 5.676 13 C 0.133 3.867 14 C -0.180 4.180 15 C -0.211 4.211 16 C -0.016 4.016 17 N -0.455 5.455 18 C 0.069 3.931 19 C -0.022 4.022 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.032 0.968 23 H 0.267 0.733 24 H 0.332 0.668 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.191 0.809 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 1.502 -19.594 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 H 0.013 0.987 4 C -0.563 4.563 5 H 0.056 0.944 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.223 1.223 11 H -0.176 1.176 12 N -0.307 5.307 13 C 0.004 3.996 14 C -0.187 4.187 15 C -0.236 4.236 16 C -0.146 4.146 17 N -0.130 5.130 18 C -0.071 4.071 19 C -0.154 4.154 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.149 0.851 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.208 0.792 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.895 1.147 -19.792 20.035 hybrid contribution 0.359 0.889 1.019 1.399 sum 3.253 2.036 -18.773 19.161 Atomic orbital electron populations 1.21971 0.97333 1.00897 0.98838 1.19413 0.92874 0.92166 0.88144 0.98685 1.21399 1.31455 1.12626 0.90792 0.94397 1.25810 0.97204 1.00119 0.95224 1.70038 1.47603 1.42469 0.98604 0.85763 0.79187 0.79721 0.77187 1.19093 1.22310 1.17560 1.60530 1.32705 1.33105 1.04347 1.20200 0.99273 0.92200 0.87929 1.19506 0.93724 1.06700 0.98765 1.20956 0.99404 1.05574 0.97640 1.22188 0.82682 1.06646 1.03078 1.44183 1.07521 1.40455 1.20855 1.22270 0.84636 1.02882 0.97344 1.21810 0.98330 1.03246 0.91978 0.92608 0.93203 0.94921 0.92395 0.85056 0.96022 0.91442 0.85111 0.79216 0.89693 0.89218 0.88125 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.89 71.98 0.64 -5.38 16 2 C 0.18 9.08 2.19 44.17 0.10 9.18 16 3 H 0.00 -0.22 6.86 -2.39 -0.02 -0.23 16 4 C -0.52 -31.01 9.17 25.60 0.23 -30.77 16 5 H 0.04 2.47 7.86 -2.91 -0.02 2.45 16 6 C 0.01 0.84 5.45 84.65 0.46 1.30 16 7 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 8 Si 0.95 46.18 24.37 68.60 1.67 47.85 16 9 H -0.26 -12.21 6.87 99.48 0.68 -11.53 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.25 -11.41 6.53 99.48 0.65 -10.76 16 12 N -0.68 -29.90 6.29 -499.44 -3.14 -33.04 16 13 C 0.13 4.94 5.98 85.56 0.51 5.45 16 14 C -0.18 -5.93 5.65 -19.99 -0.11 -6.05 16 15 C -0.21 -6.34 10.81 22.14 0.24 -6.10 16 16 C -0.02 -0.38 11.43 83.21 0.95 0.57 16 17 N -0.45 -10.27 3.15 -547.91 -1.72 -11.99 16 18 C 0.07 0.85 11.12 127.77 1.42 2.27 16 19 C -0.02 -0.63 11.35 83.21 0.94 0.32 16 20 H 0.05 2.18 7.45 -2.39 -0.02 2.16 16 21 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 22 H 0.03 1.48 3.27 -2.39 -0.01 1.47 16 23 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 24 H 0.33 15.14 8.22 -89.70 -0.74 14.40 16 25 H 0.02 0.79 8.06 -2.39 -0.02 0.77 16 26 H 0.07 2.45 7.44 -2.39 -0.02 2.44 16 27 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.19 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -70.46 264.52 2.77 -67.68 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.28 Total: 18.62 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 5.39 Total: -29.21 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.57 Total: -104.93 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.67 Total: 47.85 kcal Total: -70.46 2.77 -67.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308255020.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.322 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds