Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47545 * 2 1 4 4 N 1.46499 * 109.47544 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99718 * 269.99954 * 4 3 2 6 6 H 1.08008 * 119.99890 * 146.14117 * 5 4 3 7 7 C 1.38812 * 120.00349 * 326.13843 * 5 4 3 8 8 N 1.31616 * 120.00054 * 336.56034 * 7 5 4 9 9 Si 1.86803 * 119.99952 * 156.55358 * 7 5 4 10 10 H 1.48497 * 109.47074 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47164 * 120.00190 * 9 7 5 12 12 H 1.48497 * 109.47119 * 240.00185 * 9 7 5 13 13 C 1.46499 * 120.00066 * 89.99714 * 4 3 2 14 14 C 1.50697 * 109.46739 * 89.72740 * 13 4 3 15 15 C 1.34851 * 125.88910 * 95.00279 * 14 13 4 16 16 C 1.40898 * 107.41475 * 180.02562 * 15 14 13 17 17 C 1.34839 * 107.41765 * 359.97438 * 16 15 14 18 18 N 1.36343 * 108.22498 * 0.26557 * 17 16 15 19 19 H 0.96990 * 125.64257 * 179.73968 * 18 17 16 20 20 H 1.08994 * 109.47223 * 300.00400 * 1 2 3 21 21 H 1.09007 * 109.47073 * 59.99986 * 1 2 3 22 22 H 1.08999 * 109.47710 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47223 * 239.99600 * 2 1 3 24 24 H 1.09011 * 109.46648 * 119.99748 * 2 1 3 25 25 H 1.09003 * 109.46962 * 59.99476 * 3 2 1 26 26 H 1.09003 * 109.47408 * 299.99994 * 3 2 1 27 27 H 0.96997 * 119.99973 * 179.97438 * 8 7 5 28 28 H 1.08993 * 109.47188 * 329.73035 * 13 4 3 29 29 H 1.09001 * 109.46689 * 209.72587 * 13 4 3 30 30 H 1.08003 * 126.29590 * 0.04051 * 15 14 13 31 31 H 1.08006 * 126.28757 * 179.97438 * 16 15 14 32 32 H 1.08003 * 125.89221 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.4426 1.1869 6 1 5.1318 0.9215 1.2667 7 6 3.6713 2.1126 2.2867 8 7 2.8159 3.0980 2.1143 9 14 4.1881 1.6155 4.0117 10 1 5.1523 0.4888 3.9341 11 1 4.8307 2.7707 4.6881 12 1 2.9925 1.1921 4.7839 13 6 4.2381 1.4422 -1.2678 14 6 4.4835 2.8629 -1.7063 15 6 5.5997 3.5817 -1.4694 16 6 5.4136 4.8526 -2.0486 17 6 4.1912 4.8617 -2.6177 18 7 3.6132 3.6451 -2.4061 19 1 2.7299 3.3792 -2.7058 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 1.6767 1.9563 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 2.4538 3.5659 2.8829 28 1 3.6515 0.9240 -2.0263 29 1 5.1926 0.9326 -1.1356 30 1 6.4754 3.2450 -0.9344 31 1 6.1202 5.6693 -2.0385 32 1 3.7451 5.6912 -3.1463 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379389636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = 38.583474 kcal Electronic energy + Delta-G solvation = -13863.954068 eV Core-core repulsion = 11631.937204 eV Total energy + Delta-G solvation = -2232.016864 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66435 -37.84472 -34.14861 -33.37661 -31.58721 -30.23769 -27.37310 -26.61434 -23.62110 -21.87465 -21.30184 -20.75596 -18.77802 -18.03194 -16.73892 -15.95185 -15.68883 -15.04409 -14.64031 -14.37490 -14.22911 -13.99967 -13.59425 -13.20229 -12.96723 -12.75108 -12.67059 -12.51107 -12.27001 -12.04764 -11.76918 -11.66475 -11.28308 -10.51540 -9.52889 -8.79445 -8.52561 -7.80378 -5.36727 1.43647 1.47557 1.56495 1.63080 2.29974 2.54870 2.73724 3.27425 3.81625 4.32679 4.39789 4.47116 4.52900 4.60069 4.72925 4.76333 4.85819 4.98150 5.03004 5.12696 5.27519 5.37109 5.54247 5.57613 5.62163 5.70878 5.91457 6.34550 6.44959 6.49835 7.01713 7.19116 7.87417 8.37420 9.15763 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.012967 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.108655 B = 2158.814244 C = 2928.388160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.145 3.855 4 N -0.588 5.588 5 C -0.258 4.258 6 H 0.058 0.942 7 C -0.036 4.036 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.296 1.296 12 H -0.289 1.289 13 C 0.201 3.799 14 C 0.017 3.983 15 C -0.231 4.231 16 C -0.227 4.227 17 C -0.027 4.027 18 N -0.550 5.550 19 H 0.416 0.584 20 H 0.039 0.961 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.247 0.753 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -1.740 -8.259 8.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.307 5.307 5 C -0.388 4.388 6 H 0.076 0.924 7 C -0.233 4.233 8 N -0.557 5.557 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.223 1.223 12 H -0.215 1.215 13 C 0.075 3.925 14 C -0.099 4.099 15 C -0.256 4.256 16 C -0.252 4.252 17 C -0.158 4.158 18 N -0.146 5.146 19 H 0.253 0.747 20 H 0.058 0.942 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.214 -1.710 -8.190 8.654 hybrid contribution 0.023 0.144 1.139 1.149 sum -2.191 -1.565 -7.050 7.547 Atomic orbital electron populations 1.21636 0.95021 1.01670 1.01265 1.21916 0.95781 0.98956 1.00313 1.20952 0.82810 0.94161 1.00135 1.44237 1.01549 1.84282 1.00635 1.19289 1.05807 1.25280 0.88467 0.92430 1.25690 1.00538 0.95275 1.01825 1.70145 1.35207 1.20810 1.29494 0.85472 0.77603 0.77711 0.81283 1.19135 1.22323 1.21547 1.19696 0.97035 0.87922 0.87882 1.21825 0.90866 0.97796 0.99436 1.20710 0.99871 0.96357 1.08678 1.21050 0.98988 0.98310 1.06822 1.22156 0.95519 0.89991 1.08091 1.41939 1.15994 1.12013 1.44632 0.74730 0.94207 0.92197 0.91651 0.92676 0.94504 0.91819 0.95892 0.94328 0.91640 0.91643 0.86934 0.84289 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.91 71.98 0.71 -3.54 16 2 C -0.13 -4.94 6.26 30.59 0.19 -4.74 16 3 C 0.15 6.60 5.30 86.38 0.46 7.05 16 4 N -0.59 -28.51 2.44 -706.35 -1.72 -30.23 16 5 C -0.26 -14.08 9.48 84.03 0.80 -13.28 16 6 H 0.06 3.15 7.93 -2.91 -0.02 3.13 16 7 C -0.04 -2.01 4.94 84.86 0.42 -1.59 16 8 N -0.91 -53.71 11.34 21.65 0.25 -53.46 16 9 Si 0.95 45.18 29.61 68.60 2.03 47.21 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 C 0.20 8.33 6.20 85.63 0.53 8.87 16 14 C 0.02 0.71 6.75 41.08 0.28 0.99 16 15 C -0.23 -9.99 10.77 22.14 0.24 -9.75 16 16 C -0.23 -8.56 10.86 22.14 0.24 -8.32 16 17 C -0.03 -0.89 11.94 83.21 0.99 0.10 16 18 N -0.55 -19.50 6.08 -182.77 -1.11 -20.61 16 19 H 0.42 12.42 8.96 -92.72 -0.83 11.59 16 20 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.06 3.42 5.32 -2.39 -0.01 3.41 16 26 H 0.02 0.96 8.07 -2.39 -0.02 0.95 16 27 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 29 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 30 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 32 H 0.19 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -64.23 272.78 4.56 -59.67 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.26 Total: 21.63 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 4.86 Total: -24.21 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -2.59 Total: -104.30 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.23 4.56 -59.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379389636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.253 kcal (2) G-P(sol) polarization free energy of solvation -64.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds