Wall clock time and date at job start Mon Mar 30 2020 02:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47340 * 2 1 4 4 N 1.46497 * 109.47478 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00175 * 264.09005 * 4 3 2 6 6 H 1.07998 * 119.99827 * 187.84477 * 5 4 3 7 7 C 1.38806 * 119.99954 * 7.84372 * 5 4 3 8 8 N 1.31622 * 120.00188 * 25.44126 * 7 5 4 9 9 Si 1.86807 * 120.00116 * 205.44605 * 7 5 4 10 10 H 1.48497 * 109.47089 * 84.98289 * 9 7 5 11 11 H 1.48502 * 109.47277 * 204.98850 * 9 7 5 12 12 H 1.48500 * 109.46501 * 324.98430 * 9 7 5 13 13 C 1.46501 * 120.00224 * 84.08597 * 4 3 2 14 14 C 1.53003 * 109.46823 * 270.00561 * 13 4 3 15 15 C 1.47200 * 115.56419 * 325.68368 * 14 13 4 16 16 N 3.81040 * 152.58387 * 162.14266 * 2 1 3 17 17 C 1.53002 * 117.49942 * 111.37559 * 14 13 4 18 18 C 1.53002 * 60.00201 * 107.48547 * 17 14 13 19 19 H 1.09002 * 109.46757 * 300.00072 * 1 2 3 20 20 H 1.08992 * 109.47025 * 59.99583 * 1 2 3 21 21 H 1.08995 * 109.47228 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46757 * 239.99928 * 2 1 3 23 23 H 1.09010 * 109.46974 * 120.00463 * 2 1 3 24 24 H 1.09002 * 109.47254 * 60.00232 * 3 2 1 25 25 H 1.08998 * 109.47765 * 300.00452 * 3 2 1 26 26 H 0.97001 * 120.00137 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47777 * 150.00534 * 13 4 3 28 28 H 1.09002 * 109.46790 * 29.99819 * 13 4 3 29 29 H 1.09005 * 117.50122 * 214.97627 * 17 14 13 30 30 H 1.09005 * 117.49889 * 0.02562 * 17 14 13 31 31 H 1.09002 * 117.50151 * 252.51152 * 18 17 14 32 32 H 1.08998 * 117.51398 * 107.47950 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1903 1.5644 1.1787 6 1 5.2627 1.6918 1.1695 7 6 3.5065 1.5242 2.3860 8 7 2.3527 0.8962 2.4684 9 14 4.2237 2.3616 3.8940 10 1 3.8450 3.7975 3.8900 11 1 3.6929 1.7130 5.1199 12 1 5.7036 2.2399 3.8708 13 6 4.2370 1.3119 -1.2629 14 6 4.4918 -0.1684 -1.5539 15 6 4.7294 -1.0160 -0.3741 16 7 4.9125 -1.6700 0.5380 17 6 3.7478 -0.7944 -2.7352 18 6 5.2488 -0.5159 -2.8374 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5140 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6767 1.9564 -0.8899 26 1 1.8747 0.8684 3.3120 27 1 5.1895 1.8363 -1.1866 28 1 3.6476 1.7448 -2.0711 29 1 3.4341 -1.8339 -2.6388 30 1 3.0771 -0.1515 -3.3054 31 1 5.5652 0.3100 -3.4744 32 1 5.9229 -1.3720 -2.8080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379391403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:03 Heat of formation + Delta-G solvation = 75.477753 kcal Electronic energy + Delta-G solvation = -14162.358150 eV Core-core repulsion = 11931.941143 eV Total energy + Delta-G solvation = -2230.417008 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.26628 -35.52008 -34.51709 -31.90039 -31.04972 -26.47725 -25.44740 -22.83319 -22.22599 -21.35061 -19.91098 -16.83220 -16.38701 -14.88393 -14.53853 -13.78156 -13.57289 -13.25752 -12.98181 -12.52651 -12.21576 -11.96275 -11.64786 -11.39961 -11.16449 -11.08632 -10.89289 -10.66230 -10.48967 -10.26471 -9.99311 -9.91202 -9.63986 -9.34375 -9.09911 -8.28460 -6.88704 -5.72903 -3.03853 3.40844 3.43812 3.50984 3.51114 3.83898 4.47582 4.54630 4.65866 5.03013 5.32552 5.40793 5.55145 5.81193 5.83606 6.06663 6.24052 6.25160 6.31166 6.34732 6.39145 6.56830 6.59342 6.73735 6.95883 7.21301 7.32599 7.72272 7.84405 8.16427 8.38778 8.68727 9.27303 9.89215 10.32494 11.30295 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.013515 C = 0.011070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.740424 B = 2071.272162 C = 2528.776084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.173 3.827 4 N -0.592 5.592 5 C -0.253 4.253 6 H 0.071 0.929 7 C 0.006 3.994 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.288 1.288 11 H -0.294 1.294 12 H -0.283 1.283 13 C 0.188 3.812 14 C -0.054 4.054 15 C 0.264 3.736 16 N -0.440 5.440 17 C -0.153 4.153 18 C -0.164 4.164 19 H 0.050 0.950 20 H 0.031 0.969 21 H 0.030 0.970 22 H 0.023 0.977 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.003 0.997 26 H 0.251 0.749 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 0.184 -10.657 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.048 3.952 4 N -0.311 5.311 5 C -0.381 4.381 6 H 0.089 0.911 7 C -0.192 4.192 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.209 1.209 13 C 0.058 3.942 14 C -0.061 4.061 15 C -0.053 4.053 16 N -0.115 5.115 17 C -0.191 4.191 18 C -0.203 4.203 19 H 0.069 0.931 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.113 0.887 24 H 0.107 0.893 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.531 -0.799 -9.065 9.116 hybrid contribution 0.174 0.439 0.613 0.774 sum 0.705 -0.359 -8.453 8.490 Atomic orbital electron populations 1.21628 0.98778 0.99128 0.99963 1.22146 0.92641 1.00637 1.01408 1.20901 0.81585 0.94426 0.98322 1.44304 1.01953 1.83404 1.01438 1.19146 0.91922 1.43553 0.83514 0.91118 1.24664 0.97427 0.99990 0.97140 1.70166 1.16917 1.41278 1.24771 0.86442 0.78504 0.79858 0.82956 1.21571 1.22055 1.20863 1.20512 0.96636 0.87420 0.89669 1.19840 1.05466 0.98037 0.82761 1.27203 0.92768 0.92282 0.93088 1.81093 1.09418 1.12131 1.08829 1.23066 0.94563 1.01764 0.99728 1.23089 0.94859 1.03470 0.98879 0.93117 0.95032 0.95040 0.95870 0.88683 0.89331 0.97854 0.93888 0.92305 0.92382 0.89064 0.87708 0.87619 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 37.16 0.37 -2.27 16 2 C -0.13 -2.87 5.50 -26.73 -0.15 -3.02 16 3 C 0.17 3.96 4.92 -4.05 -0.02 3.94 16 4 N -0.59 -13.81 2.08 -173.25 -0.36 -14.17 16 5 C -0.25 -6.70 8.58 -15.06 -0.13 -6.83 16 6 H 0.07 1.91 7.93 -52.49 -0.42 1.49 16 7 C 0.01 0.16 4.90 -17.43 -0.09 0.08 16 8 N -0.89 -24.77 8.61 55.49 0.48 -24.30 16 9 Si 0.89 22.13 29.62 -169.99 -5.04 17.09 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.19 3.46 5.88 -4.04 -0.02 3.43 16 14 C -0.05 -0.93 1.67 -157.29 -0.26 -1.19 16 15 C 0.26 5.75 13.30 -20.72 -0.28 5.47 16 16 N -0.44 -10.83 18.55 42.20 0.78 -10.05 16 17 C -0.15 -2.07 8.84 -26.73 -0.24 -2.31 16 18 C -0.16 -2.05 9.93 -26.73 -0.27 -2.31 16 19 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 20 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.02 0.48 6.39 -51.93 -0.33 0.15 16 23 H 0.09 2.56 6.35 -51.92 -0.33 2.23 16 24 H 0.09 2.31 5.83 -51.93 -0.30 2.00 16 25 H 0.00 0.07 7.98 -51.93 -0.41 -0.35 16 26 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.06 1.05 8.03 -51.93 -0.42 0.63 16 28 H 0.06 0.92 7.71 -51.93 -0.40 0.52 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.24 8.05 -51.93 -0.42 0.83 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 269.05 15.07 4.05 4.05 Total: -1.00 -29.78 269.05 -5.86 -35.64 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.70 Total: -3.27 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.08 Total: -5.01 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.90 Total: -48.51 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.04 Total: 17.09 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.78 -5.86 -35.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379391403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.119 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds