Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47735 * 2 1 4 4 C 1.50695 * 109.47299 * 239.99775 * 2 1 3 5 5 H 1.08003 * 120.00073 * 240.00319 * 4 2 1 6 6 C 1.37878 * 120.00127 * 59.99983 * 4 2 1 7 7 N 1.31512 * 119.99743 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00410 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46779 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47408 * 119.99486 * 8 6 4 11 11 H 1.48497 * 109.47347 * 240.00354 * 8 6 4 12 12 N 1.46504 * 109.46944 * 119.99734 * 2 1 3 13 13 N 1.40101 * 119.99936 * 269.99715 * 12 2 1 14 14 C 1.28015 * 119.99844 * 180.02562 * 13 12 2 15 15 C 1.52486 * 127.60639 * 0.02562 * 14 13 12 16 16 C 1.54260 * 103.25328 * 142.12724 * 15 14 13 17 17 C 1.54383 * 104.02427 * 36.89332 * 16 15 14 18 18 H 1.09002 * 117.47701 * 117.55039 * 17 16 15 19 19 C 1.52974 * 118.77540 * 273.95763 * 17 16 15 20 20 C 1.51876 * 127.60941 * 180.02562 * 14 13 12 21 21 H 1.09000 * 117.39492 * 64.07557 * 20 14 13 22 22 H 1.08996 * 109.47594 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46833 * 300.00589 * 1 2 3 24 24 H 1.09002 * 109.46891 * 59.99845 * 1 2 3 25 25 H 0.97005 * 120.00052 * 180.02562 * 7 6 4 26 26 H 0.97002 * 120.00006 * 90.00227 * 12 2 1 27 27 H 1.09001 * 110.72431 * 259.96987 * 15 14 13 28 28 H 1.08998 * 110.72754 * 23.24388 * 15 14 13 29 29 H 1.08996 * 109.62528 * 278.62653 * 16 15 14 30 30 H 1.09000 * 111.23336 * 155.94564 * 16 15 14 31 31 H 1.09002 * 117.45693 * 200.19059 * 19 17 16 32 32 H 1.08998 * 117.46539 * 344.98401 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6906 1.1962 13 7 2.2518 0.0300 2.3748 14 6 2.6789 -0.5733 3.4199 15 6 2.9901 -2.0580 3.5754 16 6 4.2442 -2.0643 4.4737 17 6 4.0031 -0.9020 5.4608 18 1 3.9271 -1.1490 6.5197 19 6 4.4151 0.5122 5.0479 20 6 2.9875 0.0317 4.7784 21 1 2.1569 0.4674 5.3337 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7089 1.1613 -3.4844 26 1 2.1800 -1.6467 1.1723 27 1 2.1693 -2.5740 4.0736 28 1 3.2008 -2.5115 2.6069 29 1 5.1298 -1.8744 3.8674 30 1 4.3409 -3.0083 5.0100 31 1 4.5570 1.2462 5.8412 32 1 5.0821 0.6117 4.1916 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382177186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = 58.601577 kcal Electronic energy + Delta-G solvation = -13315.788118 eV Core-core repulsion = 11084.639304 eV Total energy + Delta-G solvation = -2231.148814 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.27606 -35.96630 -33.70439 -31.30919 -30.57364 -27.46635 -25.25284 -24.51270 -22.51293 -20.53097 -19.66364 -18.59997 -16.96217 -15.98088 -15.12327 -14.82761 -14.15635 -13.46201 -12.87126 -12.77912 -12.56342 -12.11908 -11.82729 -11.65378 -11.22124 -11.01764 -10.86628 -10.72399 -10.38436 -10.21672 -10.20250 -9.92601 -9.67651 -9.16512 -8.90093 -8.48519 -6.81093 -6.10566 -4.18343 2.97685 3.24769 3.32161 3.35582 3.69864 3.94646 4.38487 4.74336 4.97493 5.06671 5.21560 5.24660 5.53797 5.57745 5.59683 5.82200 5.86664 5.98954 6.17818 6.25136 6.35916 6.43897 6.82426 7.05388 7.15496 7.23107 7.63144 7.85371 7.92814 8.23393 8.39840 8.91402 9.47892 9.52547 10.95468 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.051618 B = 0.006708 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.315754 B = 4172.925097 C = 4396.306008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.039 0.961 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.636 5.636 13 N -0.193 5.193 14 C 0.013 3.987 15 C -0.106 4.106 16 C -0.086 4.086 17 C -0.165 4.165 18 H 0.111 0.889 19 C -0.146 4.146 20 C -0.088 4.088 21 H 0.114 0.886 22 H 0.024 0.976 23 H 0.011 0.989 24 H 0.089 0.911 25 H 0.263 0.737 26 H 0.367 0.633 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -4.000 12.426 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.197 3.803 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.373 5.373 13 N -0.001 5.001 14 C -0.182 4.182 15 C -0.147 4.147 16 C -0.124 4.124 17 C -0.184 4.184 18 H 0.129 0.871 19 C -0.185 4.185 20 C -0.109 4.109 21 H 0.132 0.868 22 H 0.044 0.956 23 H 0.030 0.970 24 H 0.107 0.893 25 H 0.073 0.927 26 H 0.203 0.797 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.007 -2.868 11.714 12.708 hybrid contribution 0.426 -1.591 -0.698 1.789 sum 4.432 -4.459 11.016 12.684 Atomic orbital electron populations 1.22203 0.99266 0.99048 1.00395 1.18466 0.89981 0.93465 0.78436 0.94275 1.21289 1.31952 1.13141 0.90289 0.92275 1.24865 0.94899 0.95026 0.98931 1.69908 1.36233 1.22610 1.23709 0.86386 0.78600 0.79544 0.82534 1.19812 1.20842 1.20845 1.48799 1.74435 1.07652 1.06444 1.73261 1.06342 1.26977 0.93532 1.23895 1.07571 0.93069 0.93622 1.21813 0.97888 0.95326 0.99662 1.21718 0.97834 0.96838 0.96031 1.23276 1.05368 0.90824 0.98892 0.87115 1.23013 0.97168 0.95563 1.02712 1.21373 0.92975 1.03613 0.92908 0.86784 0.95649 0.96950 0.89289 0.92675 0.79671 0.90683 0.91563 0.91584 0.91104 0.88373 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.29 37.16 0.35 -3.48 16 2 C 0.30 7.92 3.23 -69.08 -0.22 7.70 16 3 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.53 -14.57 8.74 -34.44 -0.30 -14.87 16 5 H 0.06 1.60 7.79 -52.48 -0.41 1.20 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.64 -14.83 6.07 -5.88 -0.04 -14.87 16 13 N -0.19 -4.21 11.50 36.32 0.42 -3.79 16 14 C 0.01 0.23 7.23 -77.44 -0.56 -0.33 16 15 C -0.11 -1.57 6.32 -26.34 -0.17 -1.73 16 16 C -0.09 -1.04 6.66 -25.35 -0.17 -1.21 16 17 C -0.17 -1.91 6.97 -89.43 -0.62 -2.53 16 18 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.15 -1.80 10.08 -26.73 -0.27 -2.07 16 20 C -0.09 -1.25 6.85 -90.71 -0.62 -1.87 16 21 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 22 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.37 8.02 7.00 -182.59 -1.28 6.74 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.03 6.88 -51.93 -0.36 0.67 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 267.89 15.07 4.04 4.04 Total: -1.00 -29.06 267.89 -8.38 -37.44 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.72 Total: 4.37 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.68 Total: -18.69 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 1.01 Total: -43.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.06 -8.38 -37.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382177186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.040 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds