Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47735 * 2 1 4 4 C 1.50695 * 109.47299 * 239.99775 * 2 1 3 5 5 H 1.08003 * 120.00073 * 240.00319 * 4 2 1 6 6 C 1.37878 * 120.00127 * 59.99983 * 4 2 1 7 7 N 1.31512 * 119.99743 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00410 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46779 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47408 * 119.99486 * 8 6 4 11 11 H 1.48497 * 109.47347 * 240.00354 * 8 6 4 12 12 N 1.46504 * 109.46944 * 119.99734 * 2 1 3 13 13 N 1.40101 * 119.99936 * 269.99715 * 12 2 1 14 14 C 1.28015 * 119.99844 * 180.02562 * 13 12 2 15 15 C 1.52486 * 127.60639 * 0.02562 * 14 13 12 16 16 C 1.54260 * 103.25328 * 142.12724 * 15 14 13 17 17 C 1.54383 * 104.02427 * 36.89332 * 16 15 14 18 18 H 1.09002 * 117.47701 * 117.55039 * 17 16 15 19 19 C 1.52974 * 118.77540 * 273.95763 * 17 16 15 20 20 C 1.51876 * 127.60941 * 180.02562 * 14 13 12 21 21 H 1.09000 * 117.39492 * 64.07557 * 20 14 13 22 22 H 1.08996 * 109.47594 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46833 * 300.00589 * 1 2 3 24 24 H 1.09002 * 109.46891 * 59.99845 * 1 2 3 25 25 H 0.97005 * 120.00052 * 180.02562 * 7 6 4 26 26 H 0.97002 * 120.00006 * 90.00227 * 12 2 1 27 27 H 1.09001 * 110.72431 * 259.96987 * 15 14 13 28 28 H 1.08998 * 110.72754 * 23.24388 * 15 14 13 29 29 H 1.08996 * 109.62528 * 278.62653 * 16 15 14 30 30 H 1.09000 * 111.23336 * 155.94564 * 16 15 14 31 31 H 1.09002 * 117.45693 * 200.19059 * 19 17 16 32 32 H 1.08998 * 117.46539 * 344.98401 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6906 1.1962 13 7 2.2518 0.0300 2.3748 14 6 2.6789 -0.5733 3.4199 15 6 2.9901 -2.0580 3.5754 16 6 4.2442 -2.0643 4.4737 17 6 4.0031 -0.9020 5.4608 18 1 3.9271 -1.1490 6.5197 19 6 4.4151 0.5122 5.0479 20 6 2.9875 0.0317 4.7784 21 1 2.1569 0.4674 5.3337 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7089 1.1613 -3.4844 26 1 2.1800 -1.6467 1.1723 27 1 2.1693 -2.5740 4.0736 28 1 3.2008 -2.5115 2.6069 29 1 5.1298 -1.8744 3.8674 30 1 4.3409 -3.0083 5.0100 31 1 4.5570 1.2462 5.8412 32 1 5.0821 0.6117 4.1916 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382177186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = 41.194224 kcal Electronic energy + Delta-G solvation = -13316.542957 eV Core-core repulsion = 11084.639304 eV Total energy + Delta-G solvation = -2231.903653 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43366 -37.67378 -35.55637 -33.07883 -31.87112 -29.19485 -27.34087 -25.88118 -23.66960 -22.31329 -20.82590 -20.11120 -18.57335 -17.59509 -16.96821 -16.17926 -15.62382 -15.06296 -14.54379 -14.35316 -13.89650 -13.55429 -13.30383 -13.13117 -12.94313 -12.82600 -12.55518 -12.28542 -12.08866 -11.97444 -11.79751 -11.17449 -11.03638 -10.76417 -10.60140 -10.45201 -8.54819 -8.19160 -6.36658 1.40786 1.41101 1.53135 1.54709 2.17397 2.45447 2.80394 3.09174 3.67090 3.88794 3.92935 4.22410 4.41850 4.47134 4.54487 4.64653 4.74160 4.91191 4.95741 5.01616 5.10735 5.13779 5.16662 5.20772 5.41919 5.48525 5.58002 5.80841 5.90250 6.23037 6.44343 6.85924 7.35473 7.91230 8.86295 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.051618 B = 0.006708 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.315754 B = 4172.925097 C = 4396.306008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.308 3.692 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.267 1.267 10 H -0.274 1.274 11 H -0.278 1.278 12 N -0.652 5.652 13 N -0.253 5.253 14 C 0.037 3.963 15 C -0.112 4.112 16 C -0.084 4.084 17 C -0.135 4.135 18 H 0.147 0.853 19 C -0.143 4.143 20 C -0.123 4.123 21 H 0.126 0.874 22 H 0.029 0.971 23 H 0.015 0.985 24 H 0.069 0.931 25 H 0.267 0.733 26 H 0.370 0.630 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 -5.410 14.130 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.204 3.796 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.192 1.192 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.389 5.389 13 N -0.059 5.059 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.122 4.122 17 C -0.154 4.154 18 H 0.164 0.836 19 C -0.181 4.181 20 C -0.143 4.143 21 H 0.144 0.856 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.207 0.793 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.098 -4.281 13.437 14.996 hybrid contribution 0.148 -1.147 -1.024 1.545 sum 5.246 -5.429 12.413 14.528 Atomic orbital electron populations 1.22012 0.98966 0.98928 0.99491 1.18066 0.90181 0.91394 0.79940 0.98619 1.21544 1.32425 1.13387 0.91261 0.92348 1.25747 0.94867 0.95665 1.01990 1.70031 1.36936 1.23774 1.24648 0.85294 0.78212 0.78408 0.78386 1.19175 1.19948 1.20411 1.48307 1.76536 1.07424 1.06678 1.73318 1.10542 1.27831 0.94178 1.24906 1.01965 0.95464 0.93533 1.21973 1.00066 0.93139 1.00069 1.21772 0.95751 0.98882 0.95836 1.23472 1.01846 0.89772 1.00276 0.83570 1.23117 0.94742 0.97298 1.02950 1.21585 0.94730 1.06764 0.91212 0.85622 0.95179 0.96572 0.91268 0.92353 0.79328 0.88876 0.92859 0.92354 0.87823 0.85512 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.13 9.29 71.98 0.67 -6.46 16 2 C 0.31 17.10 3.23 44.24 0.14 17.24 16 3 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 4 C -0.55 -31.06 8.74 25.60 0.22 -30.84 16 5 H 0.06 3.23 7.79 -2.91 -0.02 3.21 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -53.30 11.32 21.45 0.24 -53.05 16 8 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.65 -31.59 6.07 -172.52 -1.05 -32.63 16 13 N -0.25 -11.35 11.50 -38.92 -0.45 -11.80 16 14 C 0.04 1.29 7.23 47.48 0.34 1.63 16 15 C -0.11 -3.11 6.32 30.85 0.20 -2.91 16 16 C -0.08 -1.75 6.66 31.49 0.21 -1.54 16 17 C -0.14 -2.56 6.97 -10.03 -0.07 -2.63 16 18 H 0.15 1.86 8.14 -2.39 -0.02 1.85 16 19 C -0.14 -3.10 10.08 30.59 0.31 -2.79 16 20 C -0.12 -3.20 6.85 -10.85 -0.07 -3.28 16 21 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 22 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 25 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 26 H 0.37 16.72 7.00 -213.32 -1.49 15.22 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.63 6.88 -2.39 -0.02 1.61 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -64.85 267.89 2.78 -62.07 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.39 Total: 20.01 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 2.40 Total: -30.17 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -1.25 Total: -97.49 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.85 2.78 -62.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382177186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.267 kcal (2) G-P(sol) polarization free energy of solvation -64.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds